Evidence map›Paper›PMID 39704109›Full record

ArticleNucleic acids research2025

The Staphylococcus aureus non-coding RNA IsrR regulates TCA cycle activity and virulence.

Gustavo Rios-Delgado, Aubrey K G McReynolds, Emma A Pagella, Javiera Norambuena, Paul Briaud, Vincent Zheng, Matthew J Munneke, Jisun Kim, Hugo Racine, Ronan K Carroll and 6 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Discovery ofmBio · 2026
    Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. The small RNA Teg16 repressesbioRxiv : the preprint server for biology · 2026
    Article
  8. Article
  9. Article
  10. Journal of bacteriology · 2025
    Article
  11. Article
  12. Article
  13. Linking Virulence and Iron Limitation Response inJournal of proteome research · 2025
    Article
  14. Article
  15. Article
  16. Prokaryotic homeostasis - a solution to thrive and survive.Frontiers in molecular biosciences · 2025
    Review
  17. Transcriptomic and proteomic profiling ofFrontiers in cellular and infection microbiology · 2025
    Article
  18. Article
4 · The record

Corrections and comments

  • Update of
    The2024
5 · Who and what money

Authors and funding

16 authors.

Gustavo Rios-DelgadoDepartment of Biochemistry and Microbiology, Rutgers, the State University of New Jersey, 76 Lipman Dr, New Brunswick, NJ 08901, USA.
Aubrey K G McReynoldsDepartment of Microbiology, Molecular Genetics, and Immunology, University of Kansas Medical Center, 3901 Rainbow Boulevard, Kansas City, KS 66160, USA.
Emma A PagellaDepartment of Microbiology, Molecular Genetics, and Immunology, University of Kansas Medical Center, 3901 Rainbow Boulevard, Kansas City, KS 66160, USA.
Javiera NorambuenaDepartment of Biochemistry and Microbiology, Rutgers, the State University of New Jersey, 76 Lipman Dr, New Brunswick, NJ 08901, USA.
Paul BriaudDepartment of Biological Sciences, Ohio University, 7 Depot St, Athens, OH 45701, USA.
Vincent ZhengDepartment of Biochemistry and Microbiology, Rutgers, the State University of New Jersey, 76 Lipman Dr, New Brunswick, NJ 08901, USA.
Matthew J MunnekeDepartment of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, 1211 Medical Center Drive, Nashville, TN 37232, USA.
Jisun KimDepartment of Pathology, Immunology and Laboratory Medicine, Center for Immunity and Inflammation, Rutgers New Jersey Medical School, 185 South Orange Avenue, Newark, NJ 07103, USA.
Hugo RacineUniversité de Strasbourg, CNRS, Architecture et Réactivité de l'ARN, UPR9002, 15 rue René Descartes, Strasbourg 67000, France.
Ronan K CarrollDepartment of Biological Sciences, Ohio University, 7 Depot St, Athens, OH 45701, USA.
Ehud ZelzionOffice of Advanced Research Computing, Rutgers University, 96 Frelinghuysen Road, Piscataway, NJ 08854, USA.
Eric SkaarDepartment of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, 1211 Medical Center Drive, Nashville, TN 37232, USA.
Jeffrey L BoseDepartment of Microbiology, Molecular Genetics, and Immunology, University of Kansas Medical Center, 3901 Rainbow Boulevard, Kansas City, KS 66160, USA.
Dane ParkerDepartment of Pathology, Immunology and Laboratory Medicine, Center for Immunity and Inflammation, Rutgers New Jersey Medical School, 185 South Orange Avenue, Newark, NJ 07103, USA.
David LalaounaUniversité de Strasbourg, CNRS, Architecture et Réactivité de l'ARN, UPR9002, 15 rue René Descartes, Strasbourg 67000, France.
Jeffrey M BoydDepartment of Biochemistry and Microbiology, Rutgers, the State University of New Jersey, 76 Lipman Dr, New Brunswick, NJ 08901, USA.ORCID 0000-0001-7721-3926

Funding

Translational Analysis CoreP30DK058404 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MARY Kay WASHINGTON · 2002 to 2026
$29.9M
TRAINING PROGRAM IN ENVIRONMENTAL TOXICOLOGYT32ES007028 · NIEHS · VANDERBILT UNIVERSITY · PI F PETER Guengerich, Fiona Edith Harrison · 1985 to 2026
$15.7M
Humanized lung implant mouse model to study Staphylococcus aureus airway interactionsR21AI153646 · NIAID · RBHS-NEW JERSEY MEDICAL SCHOOL · PI PARKER, DANE · 2020 to 2021
$430k
Contribution of Spx to Staphylococcus aureus physiology and virulenceR21AI156251 · NIAID · UNIVERSITY OF KANSAS MEDICAL CENTER · PI BOSE, JEFFREY LEE · 2022 to 2023
$426k
Clostridioides difficile nucleobase scavenging in the competitive gut environmentF31AI172352 · NIAID · VANDERBILT UNIVERSITY · PI MUNNEKE, MATTHEW · 2023 to 2024
$67k
Agence Nationale de la Recherche ANR-20-CE12-0021National Institute of Allergy and Infectious Diseases 1R01Al139100-01National Science Foundation 1750624New Jersey Commission on Cancer Research COCR22RBG005NIAID NIH HHS F31 AI172352NIAID NIH HHS R21 AI153646NIAID NIH HHS R21 AI156251NIDDK NIH HHS P30 DK058404NIEHS NIH HHS T32 ES007028NIH HHS 1R21AI156251United States Department of Agriculture NE-1028
6 · The paper itself

Abstract

Staphylococcus aureus has evolved mechanisms to cope with low iron (Fe) availability in host tissues. Staphylococcus aureus uses the ferric uptake transcriptional regulator (Fur) to sense titers of cytosolic Fe. Upon Fe depletion, apo-Fur relieves transcriptional repression of genes utilized for Fe uptake. We demonstrate that an S. aureus Δfur mutant has decreased expression of acnA, which codes for the Fe-dependent enzyme aconitase. This prevents the Δfur mutant from growing with amino acids as sole carbon and energy sources. We used a suppressor screen to exploit this phenotype and determined that a mutation that decreases the transcription of isrR, which produces a regulatory RNA, increased acnA expression, thereby enabling growth. Directed mutation of bases predicted to facilitate the interaction between the acnA transcript and IsrR, decreased the ability of IsrR to control acnA expression in vivo and IsrR bound to the acnA transcript in vitro. IsrR also bound transcripts coding the alternate tricarboxylic acid cycle proteins sdhC, mqo, citZ and citM. Whole-cell metal analyses suggest that IsrR promotes Fe uptake and increases intracellular Fe not ligated by macromolecules. Lastly, we determined that Fur and IsrR promote infection using murine skin and acute pneumonia models.

Indexed as

Bacterial ProteinsCitric Acid CycleGene Expression Regulation, BacterialRNA, BacterialRNA, UntranslatedStaphylococcus aureusAconitate HydrataseAnimalsIronMiceMutationStaphylococcal InfectionsVirulenceAconitate HydrataseBacterial ProteinsIronRNA, BacterialRNA, Untranslated

Identifiers

PMID39704109
PMCPMC11879123

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.