Evidence map›Paper›PMID 35881331›Full record

ArticleTransboundary and emerging diseases2022

Influenza A virus transmission in swine farms and during transport in the swine supply chain.

Jonathan Tin Lai Cheung, Eric Hy Lau, Ziying Jin, Huachen Zhu, Yi Guan, Malik Peiris

Open access · greenAbstract read
In one paragraph

Article in Transboundary and emerging diseases, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Jonathan Tin Lai CheungSchool of Public Health, The University of Hong Kong, Hong Kong, China.ORCID https://orcid.org/0000-0003-0492-0392
Eric Hy LauSchool of Public Health, The University of Hong Kong, Hong Kong, China.ORCID https://orcid.org/0000-0002-6688-9637
Ziying JinSchool of Public Health, The University of Hong Kong, Hong Kong, China.
Huachen ZhuSchool of Public Health, The University of Hong Kong, Hong Kong, China.
Yi GuanSchool of Public Health, The University of Hong Kong, Hong Kong, China.
Malik PeirisSchool of Public Health, The University of Hong Kong, Hong Kong, China.ORCID https://orcid.org/0000-0001-8217-5995
Shantou University · CNUniversity of Hong Kong · HK

Funding

NIAID Centers of Excellence for Influenza Research and Response: Universal Influenza Vaccine Research Activities75N93021C00016 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI WEBBY, RICHARD · 2021 to 2025
$91.4M
HHS 75N93021C00016HHS HHSN266200700005CHHS HHSN272201400006CNIAID NIH HHS 75N93021C00016NIAID NIH HHS HHSN266200700005CNIAID NIH HHS HHSN272201400006CNIH HHS
6 · The paper itself

Abstract

The last influenza pandemic in 2009 emerged from swine and surveillance of swine influenza is important for pandemic preparedness. Movement of swine during husbandry, trade or marketing for slaughter provide opportunities for transfer and genetic reassortment of swine influenza viruses. Over 90% of the swine slaughtered at the central swine abattoir in Hong Kong are imported from farms located in multiple provinces in mainland China. There is opportunity for virus cross-infection during this transport and slaughter process. Of the 26,980 swabs collected in the slaughterhouse in Hong Kong from 5 January 2012 to 15 December 2016, we analysed sequence data on influenza A (H3N2) virus isolates (n = 174) in conjunction with date of sampling and originating farm. Molecular epidemiology provided evidence of virus cross-infection between swine originating from different farms during transport. The findings are also suggestive of a virus lineage persisting in a swine farm for over 2 years, although the lack of information on management practices at farm-level means that alternative explanations cannot be excluded. We used virus serology and isolation data from 4226 pairs of linked serum and swabs collected from the same pig at slaughter from swine originating from Guangdong Province to compare the force of infection (FOI) during transport and within farms. The mean weekly FOI during transport was λ

Indexed as

Influenza A virusOrthomyxoviridae InfectionsSwine DiseasesAnimalsFarmsInfluenza A Virus, H3N2 SubtypeSeroepidemiologic StudiesSwineforce of infectionH3N2influenza A virusswinetransmission dynamicsvalue chains

Identifiers

PMID35881331
PMCPMC9529857
OpenAlexW4288036624

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.