Evidence map›Paper›PMID 32205441›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Deficiency in classical nonhomologous end-joining-mediated repair of transcribed genes is linked to SCA3 pathogenesis.

Anirban Chakraborty, Nisha Tapryal, Tatiana Venkova, Joy Mitra, Velmarini Vasquez, Altaf H Sarker, Sara Duarte-Silva, Weihan Huai, Tetsuo Ashizawa, Gourisankar Ghosh and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 40 citations in OpenAlex.

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  8. Ubiquitin system mutations in neurological diseases.Trends in biochemical sciences · 2024
    Review
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  10. Fructose-2,6-bisphosphate restores DNA repair activity of PNKP and ameliorates neurodegenerative symptoms in Huntington's disease.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  19. DNA Double-Strand Breaks as Pathogenic Lesions in Neurological Disorders.International journal of molecular sciences · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 2 countries.

Anirban ChakrabortyDepartment of Internal Medicine, Division of Pulmonary, Critical Care and Sleep Medicine, University of Texas Medical Branch, Galveston, TX 77555.
Nisha TapryalDepartment of Internal Medicine, Division of Pulmonary, Critical Care and Sleep Medicine, University of Texas Medical Branch, Galveston, TX 77555.
Tatiana VenkovaDepartment of Internal Medicine, Division of Pulmonary, Critical Care and Sleep Medicine, University of Texas Medical Branch, Galveston, TX 77555.ORCID 0000-0002-1586-5600
Joy MitraDepartment of Neurosurgery, Center for Neuroregeneration, The Houston Methodist Research Institute, Houston, TX 77030.ORCID 0000-0002-5985-0582
Velmarini VasquezDepartment of Neurosurgery, Center for Neuroregeneration, The Houston Methodist Research Institute, Houston, TX 77030.
Altaf H SarkerDepartment of Cancer and DNA Damage Responses, Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720.ORCID 0000-0001-6868-8460
Sara Duarte-SilvaSchool of Medicine, Life and Health Sciences Research Institute, University of Minho, 4710-057 Braga, Portugal.
Weihan HuaiDepartment of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA 92093.
Tetsuo AshizawaDepartment of Neurology, The Houston Methodist Research Institute, Houston, TX 77030.
Gourisankar GhoshDepartment of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA 92093.
Patricia MacielSchool of Medicine, Life and Health Sciences Research Institute, University of Minho, 4710-057 Braga, Portugal.ORCID 0000-0002-0920-6350
Partha S SarkarDepartment of Neurology and Neuroscience and Cell Biology, University of Texas Medical Branch, Galveston, TX 77555.
Muralidhar L HegdeDepartment of Neurosurgery, Center for Neuroregeneration, The Houston Methodist Research Institute, Houston, TX 77030.ORCID 0000-0001-7333-8123
Xu ChenDepartment of Neurosciences, University of California San Diego, La Jolla, CA 92093.ORCID 0000-0001-8926-3090
Tapas K HazraDepartment of Internal Medicine, Division of Pulmonary, Critical Care and Sleep Medicine, University of Texas Medical Branch, Galveston, TX 77555; tkhazra@utmb.edu.
The University of Texas Medical Branch at Galveston · USHouston Methodist · USUniversity of California San Diego · USUniversity of Minho · PTLawrence Berkeley National Laboratory · US

Funding

Synthetic Organic Chemistry CoreP30ES006676 · NIEHS · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI ELFERINK, CORNELIS JOHAN · 1995 to 2017
$21.7M
Michigan Alzheimer's Disease Core CenterP30AG053760 · NIA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LIEBERMAN, ANDREW P · 2016 to 2020
$10.1M
Preferential single-strand break repair in the active genes of mammalian cellsR01NS073976 · NINDS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI HAZRA, TAPAS K · 2012 to 2021
$3.3M
Mechanism of DNA strand-break repair deficiency in Huntington's diseaseR01NS096305 · NINDS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI HAZRA, TAPAS K, SARKAR, PARTHA S · 2016 to 2020
$2.3M
Etiological Linkage of DNA Damage/Repair Deficiency in Neurodegenerative DiseasesR01NS088645 · NINDS · METHODIST HOSPITAL RESEARCH INSTITUTE · PI HEGDE, MURALIDHAR L · 2015 to 2019
$1.8M
Pathogenic Role of DNA-Damage Response Pathway in the Diabetic RetinaR01EY026089 · NEI · UNIVERSITY OF TEXAS MED BR GALVESTON · PI SARKAR, PARTHA S · 2016 to 2019
$1.4M
NEI NIH HHS R01 EY026089NIA NIH HHS P30 AG053760NIEHS NIH HHS P30 ES006676NINDS NIH HHS R01 NS073976NINDS NIH HHS R01 NS088645NINDS NIH HHS R01 NS096305
6 · The paper itself

Abstract

Spinocerebellar ataxia type 3 (SCA3) is a dominantly inherited neurodegenerative disease caused by CAG (encoding glutamine) repeat expansion in the Ataxin-3 (

Indexed as

DNA End-Joining RepairAged, 80 and overAnimalsAnimals, Genetically ModifiedAtaxin-3BrainCell LineDisease Models, AnimalDNA Breaks, Double-StrandedDNA Repair EnzymesDrosophilaFemaleGene Knockdown TechniquesHumansInduced Pluripotent Stem CellsMachado-Joseph DiseaseAtaxin-3ATXN3 protein, humanAtxn3 protein, mouseDNA Repair EnzymesPeptidesPhosphotransferases (Alcohol Group Acceptor)PNKP protein, humanPnkp protein, mousepolyglutamineRepressor ProteinsRNA Polymerase IIRNA, Small InterferingATXN3DNA double-strand break repairPNKPRNA-templated TC-NHEJspinocerebellar ataxia type-3

Identifiers

PMID32205441
PMCPMC7148577
OpenAlexW3012823631

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.