Evidence map›Paper›PMID 31927602›Full record

ArticleAnalytical and bioanalytical chemistry2020

Mass spectrometry of in-gel digests reveals differences in amino acid sequences of high-molecular-weight glutenin subunits in spelt and emmer compared to common wheat.

Sabrina Geisslitz, Antoine H P America, Katharina Anne Scherf

Open access · greenAbstract read
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In one paragraph

Article in Analytical and bioanalytical chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 2 countries.

Sabrina GeisslitzLeibniz-Institute for Food Systems Biology at the Technical University of Munich, 85354, Freising, Germany.
Antoine H P AmericaWageningen Plant Research, Wageningen University & Research, 6708 PB, Wageningen, The Netherlands.
Katharina Anne ScherfLeibniz-Institute for Food Systems Biology at the Technical University of Munich, 85354, Freising, Germany. katharina.scherf@kit.edu.ORCID http://orcid.org/0000-0001-8315-5400
Karlsruhe Institute of Technology · DELeibniz-Institute for Food Systems Biology at the Technical University of Munich · DEWageningen University & Research · NL

Funding

Allianz Industrie Forschung AiF 18355 N
6 · The paper itself

Abstract

High-molecular-weight glutenin subunits (HMW-GS) play an important role for the baking quality of wheat. The ancient wheats emmer and spelt differ in their HMW-GS pattern compared to modern common wheat and this might be one reason for their comparatively poor baking quality. The aim of this study was to elucidate similarities and differences in the amino acid sequences of two 1Bx HMW-GS of common wheat, spelt and emmer. First, the sodium dodecyl polyacrylamide gel electrophoresis (SDS-PAGE) system was optimized to separate common wheat, spelt and emmer Bx6 and Bx7 from other HMW-GS (e.g., 1Ax and 1By) in high concentrations. The in-gel digests of the Bx6 and Bx7 bands were analyzed by untargeted LC-MS/MS experiments revealing different UniProtKB accessions in spelt and emmer compared to common wheat. The HMW-GS Bx6 and Bx7, respectively, of emmer and spelt showed differences in the amino acid sequences compared to those of common wheat. The identities of the peptide variations were confirmed by targeted LC-MS/MS. These peptides can be used to differentiate between Bx6 and Bx7 of spelt and emmer and Bx6 and Bx7 of common wheat. The findings should help to increase the reliability and curation status of wheat protein databases and to understand the effects of protein structure on the functional properties. Graphical abstract.

Indexed as

Amino Acid SequenceDatabases, ProteinElectrophoresis, Polyacrylamide GelGlutensMolecular WeightSequence Homology, Amino AcidTandem Mass SpectrometryTriticumgluteninGlutensHigh-molecular-weight glutenin subunits (HMW-GS)LC-MS/MSProteomicsSDS-PAGEWheat

Identifiers

PMID31927602
OpenAlexW2999140566

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.