ArticleScientific reports2019
Illumina-based Analysis of Endophytic Bacterial Diversity of four Allium species.
Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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18 citing papers in PubMed.
- The Seasonal and Spatial Patterns of Planktonic Bacterial and Fungal Community Structure and the Response to Environmental Factors in the Danjiangkou Reservoir, China.Environmental microbiology reports · 2026Article
- Translational microbiomes in agriculture: microbial communities as tools to effect host and system health for improved crop production.Applied and environmental microbiology · 2026Review
- Plant growth-promoting endophytic microbiota from garlic bulbs.International microbiology : the official journal of the Spanish Society for Microbiology · 2025Article
- Deciphering the influence of fertilization systems on the Allium ampeloprasum rhizosphere microbial diversity and community structure through a shotgun metagenomics profiling approach.Environmental microbiome · 2025Article
- Article
- The Changes of the Endophytic Bacterial Community from Pepper Varieties with Different Capsaicinoids.Microorganisms · 2025Article
- Deciphering the nature and statistical optimization of antimicrobial metabolites of two endophytic bacilli.AMB Express · 2025Article
- Diversity changes of rhizosphere and endophytic bacteria inFrontiers in plant science · 2025Article
- Performance of Halo-Alkali-Tolerant Endophytic Bacteria on HybridMicroorganisms · 2024Article
- Insight into endophytic microbial diversity in two halophytes and plant beneficial attributes ofFrontiers in microbiology · 2024Article
- Endophytic bacterial community structure and diversity of the medicinal plant Mirabilis himalaica from different locations.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2023Article
- Diversity and Biocontrol Potential of Endophytic Fungi and Bacteria Associated with Healthy Welsh Onion Leaves in Taiwan.Microorganisms · 2023Article
- Partial Substitution of Fish Meal with Soy Protein Concentrate on Growth, Liver Health, Intestinal Morphology, and Microbiota in Juvenile Large Yellow Croaker (Aquaculture nutrition · 2023Article
- An emerging chemical fumigant: two-sided effects of dazomet on soil microbial environment and plant response.Environmental science and pollution research international · 2022Article
- Root-Associated Endophytic Bacterial Community Composition ofIndian journal of microbiology · 2021Article
- The Formation of Antibiotic Resistance Genes in Bacterial Communities During Garlic Powder Processing.Frontiers in nutrition · 2021Article
- Endophytic Bacterial Communities ofFrontiers in microbiology · 2021Article
- High nitrogen concentration alter microbial community in Allium fistulosum rhizosphere.PloS one · 2020Article
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Abstract
Allium species are popular vegetables in China and possess antifungal and antibacterial activities. This study aimed to compare the endophytic bacterial community in the four crucial Allium species in China, Chinese leek (CL), garlic (GA), onion (ON,) and Welsh onion (WO), using sequences of the V3-V4 region of the bacterial 16S rRNA gene. A total of 1,036,637 high-quality sequences and 719 operational taxonomic units (OTUs) were obtained across all libraries. A total of 20 phyla, 50 classes, 80 orders, 134 families, and 234 genera were identified. Among them, 18 OTUs and 19 genera were shared among the four Allium species. Proteobacteria (42.68%) and Bacteroidetes (20.18%) were the dominant phyla in CL, while one unclassified (>70%) was the dominant phyla in the other three Allium species. The alpha-diversity analysis showed the bacterial richness and diversity in CL were significantly higher than those in the other three Allium species. Principal coordinate analysis (PCA) showed endophytic bacterial communities in GA, WO, and ON were more similar than those in CL. Phylogenetic Investigation of Communities by Reconstruction of Unobserved States (PICRUSt) analysis revealed endophytic bacteria mostly enriched in Membrane Transport, Amino Acid Metabolism and Carbohydrate Metabolism pathway. 17 of the 23 Kyoto Encyclopedia of Genes and Genomes (KEGG) categories and 159 of the 206 lower-level KEGG pathways in CL were significantly higher than those in the other three Allium species. Pearson's correlation indicated that KEGG pathways with significant differences among the Allium species were closely related to the bacterial genera with significant differences between the Allium species. The findings of our study provided insight into the complex endophytic microbial communities in Allium species.
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