Evidence map›Paper›PMID 31551085›Full record

ArticleBMC research notes2019

Detection of pandemic influenza A/H1N1/pdm09 virus among pigs but not in humans in slaughterhouses in Kenya, 2013-2014.

Eric Mogaka Osoro, Shirley Lidechi, Jeremiah Nyaundi, Doris Marwanga, Athman Mwatondo, Mathew Muturi, Zipporah Ng'ang'a, Kariuki Njenga

Open access · goldAbstract read
In one paragraph

Article in BMC research notes, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 11 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Eric Mogaka OsoroJomo Kenyatta University of Agriculture and Technology, Nairobi, Kenya. eric.osoro@wsu.edu.
Shirley LidechiKenya Medical Research Institute, Nairobi, Kenya.
Jeremiah NyaundiKenya Medical Research Institute, Nairobi, Kenya.
Doris MarwangaKenya Medical Research Institute, Nairobi, Kenya.
Athman MwatondoMinistry of Health, Nairobi, Kenya.
Mathew MuturiMinistry of Agriculture and Irrigation, Nairobi, Kenya.
Zipporah Ng'ang'aJomo Kenyatta University of Agriculture and Technology, Nairobi, Kenya.
Kariuki NjengaWashington State University, Pullman, USA.
Kenya Medical Research Institute · KEJomo Kenyatta University of Agriculture and Technology · KEMinistry of Agriculture Livestock and Fisheries · KEMinistry of Health · KEWashington State University · US

Funding

NIAID NIH HHS HHSN266200700007C
6 · The paper itself

Abstract

objectiveWe conducted four cross-sectional studies over 1 year among humans and pigs in three slaughterhouses in Central and Western Kenya (> 350 km apart) to determine infection and exposure to influenza A viruses. Nasopharyngeal (NP) and oropharyngeal (OP) swabs were collected from participants who reported acute respiratory illness (ARI) defined as fever, cough or running nose. Nasal swabs and blood samples were collected from pigs. Human NP/OP and pig nasal swabs were tested for influenza A virus by real-time reverse transcriptase polymerase chain reaction (PCR) and pig serum was tested for anti-influenza A antibodies by ELISA.

resultsA total of 288 participants were sampled, 91.3% of them being male. Fifteen (5.2%) participants had ARI but the nine swabs collected from them were negative for influenza A virus by PCR. Of the 1128 pigs sampled, five (0.4%) nasal swabs tested positive for influenza A/H1N1/pdm09 by PCR whereas 214 of 1082 (19.8%) serum samples tested for Influenza A virus antibodies. There was higher seroprevalence in colder months and among pigs reared as free-range. These findings indicate circulation of influenza A/H1N1/pdm09 among pigs perhaps associated with good adaptation of the virus to the pig population after initial transmission from humans to pigs.

Indexed as

AbattoirsAdultAnimalsAntibodies, ViralCross-Sectional StudiesFemaleGeographyHumansInfluenza A Virus, H1N1 SubtypeInfluenza, HumanKenyaMaleMiddle AgedNasopharynxOropharynxOrthomyxoviridae InfectionsAntibodies, ViralHumanInfluenza A virusSurveillanceSwine

Identifiers

PMID31551085
PMCPMC6760099
OpenAlexW2976098065

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.