Evidence map›Paper›PMID 31186336›Full record

ArticlemSystems2019

Proteomic Profiling, Transcription Factor Modeling, and Genomics of Evolved Tolerant Strains Elucidate Mechanisms of Vanillin Toxicity in Escherichia coli.

Calum A Pattrick, Joseph P Webb, Jeffrey Green, Roy R Chaudhuri, Mark O Collins, David J Kelly

Open access · goldAbstract read
In one paragraph

Article in mSystems, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Biosynthesis of vanillin by different microorganisms: a review.World journal of microbiology & biotechnology · 2022
    Review
  6. Article
  7. Microbial production of advanced biofuels.Nature reviews. Microbiology · 2021
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Calum A PattrickDepartment of Molecular Biology and Biotechnology, The University of Sheffield, Sheffield, United Kingdom.
Joseph P WebbDepartment of Molecular Biology and Biotechnology, The University of Sheffield, Sheffield, United Kingdom.ORCID https://orcid.org/0000-0002-2825-7671
Jeffrey GreenDepartment of Molecular Biology and Biotechnology, The University of Sheffield, Sheffield, United Kingdom.
Roy R ChaudhuriDepartment of Molecular Biology and Biotechnology, The University of Sheffield, Sheffield, United Kingdom.
Mark O CollinsDepartment of Biomedical Science, The University of Sheffield, Sheffield, United Kingdom.
David J KellyDepartment of Molecular Biology and Biotechnology, The University of Sheffield, Sheffield, United Kingdom d.kelly@sheffield.ac.uk.
University of Sheffield · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Vanillin (4-hydroxy-3-methoxybenzaldehyde) is an economically important flavor compound that can be made in bacterial cell factories, but toxicity is a major problem for cells producing this aromatic aldehyde. Using (i) a global proteomic analysis supported by multiple physiological experiments, mutant analyses, and inferred transcription factor modeling and (ii) adaptive laboratory evolution (ALE) of vanillin tolerance combined with genome-wide analysis of the underlying mutations, mechanisms of vanillin toxicity in

Indexed as

adaptive evolutionaldehydecitrate synthasecopperproteomicsstress responses

Identifiers

PMID31186336
PMCPMC6561319
OpenAlexW2950010145

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.