Evidence map›Paper›PMID 30137528›Full record

ArticleNucleic acids research2018

The ATPase activity of E. coli RecA prevents accumulation of toxic complexes formed by erroneous binding to undamaged double stranded DNA.

Daniil V Gataulin, Jeffrey N Carey, Junya Li, Parisha Shah, Jennifer T Grubb, Douglas K Bishop

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Binding Behavior of Human Hepatoma-Derived Growth Factor onThe journal of physical chemistry. B · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. How strand exchange protein function benefits from ATP hydrolysis.Current opinion in genetics & development · 2021
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Daniil V GataulinDepartment of Radiation and Cellular Oncology, University of Chicago, Cummings Life Science Center, 920 East 58th Street, Chicago, IL 60615, USA.
Jeffrey N CareyDepartment of Radiation and Cellular Oncology, University of Chicago, Cummings Life Science Center, 920 East 58th Street, Chicago, IL 60615, USA.
Junya LiDepartment of Radiation and Cellular Oncology, University of Chicago, Cummings Life Science Center, 920 East 58th Street, Chicago, IL 60615, USA.
Parisha ShahDepartment of Radiation and Cellular Oncology, University of Chicago, Cummings Life Science Center, 920 East 58th Street, Chicago, IL 60615, USA.
Jennifer T GrubbDepartment of Radiation and Cellular Oncology, University of Chicago, Cummings Life Science Center, 920 East 58th Street, Chicago, IL 60615, USA.
Douglas K BishopDepartment of Radiation and Cellular Oncology, University of Chicago, Cummings Life Science Center, 920 East 58th Street, Chicago, IL 60615, USA.
University of Chicago · US

Funding

MEIOTIC INTERACTIONS TO THE RECA HOMOLOGUE DMC1R01GM050936 · NIGMS · UNIVERSITY OF CHICAGO · PI BISHOP, DOUGLAS K · 1994 to 2019
$9.2M
NIGMS NIH HHS R01 GM050936
6 · The paper itself

Abstract

The Escherichia coli RecA protein catalyzes the central step of homologous recombination using its homology search and strand exchange activity. RecA is a DNA-dependent ATPase, but its homology search and strand exchange activities are largely independent of its ATPase activity. ATP hydrolysis converts a high affinity DNA binding form, RecA-ATP, to a low affinity form RecA-ADP, thereby supporting an ATP hydrolysis-dependent dynamic cycle of DNA binding and dissociation. We provide evidence for a novel function of RecA's dynamic behavior; RecA's ATPase activity prevents accumulation of toxic complexes caused by direct binding of RecA to undamaged regions of dsDNA. We show that a mutant form of RecA, RecA-K250N, previously shown to be toxic to E. coli, is a loss-of-function ATPase-defective mutant. We use a new method for detecting RecA complexes involving nucleoid surface spreading and immunostaining. The method allows detection of damage-induced RecA foci; STED microscopy revealed these to typically be between 50 and 200 nm in length. RecA-K250N, and other toxic variants of RecA, form spontaneous DNA-bound complexes that are independent of replication and of accessory proteins required to load RecA onto tracts of ssDNA in vivo, supporting the hypothesis that RecA's expenditure of ATP serves an error correction function.

Indexed as

Adenosine TriphosphatasesAdenosine TriphosphateDNADNA-Binding ProteinsDNA, Single-StrandedEscherichia coliHomologous RecombinationHydrolysisProtein BindingRec A RecombinasesAdenosine TriphosphatasesAdenosine TriphosphateDNADNA-Binding ProteinsDNA, Single-StrandedRec A Recombinases

Identifiers

PMID30137528
PMCPMC6182174
OpenAlexW2952817995

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.