Evidence map›Paper›PMID 29581476›Full record

ArticleScientific reports2018

Dynamic Evolution of α-Gliadin Prolamin Gene Family in Homeologous Genomes of Hexaploid Wheat.

Naxin Huo, Tingting Zhu, Susan Altenbach, Lingli Dong, Yi Wang, Toni Mohr, Zhiyong Liu, Jan Dvorak, Ming-Cheng Luo, Yong Q Gu

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
12.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 63 citations in OpenAlex.

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  15. Targeting Induced Local Lesions in the WheatFrontiers in nutrition · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Naxin HuoUnited States Department of Agriculture-Agricultural Research Service, Western Regional Research Center, Albany, California, 94710, USA.
Tingting ZhuDepartment of Plant Sciences, University of California, Davis, CA, 95616, USA.
Susan AltenbachUnited States Department of Agriculture-Agricultural Research Service, Western Regional Research Center, Albany, California, 94710, USA.
Lingli DongState Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, 100101, China.
Yi WangUnited States Department of Agriculture-Agricultural Research Service, Western Regional Research Center, Albany, California, 94710, USA.
Toni MohrUnited States Department of Agriculture-Agricultural Research Service, Western Regional Research Center, Albany, California, 94710, USA.
Zhiyong LiuState Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, 100101, China.
Jan DvorakDepartment of Plant Sciences, University of California, Davis, CA, 95616, USA.
Ming-Cheng LuoDepartment of Plant Sciences, University of California, Davis, CA, 95616, USA. mluo@ucdavis.edu.ORCID 0000-0002-9744-5887
Yong Q GuUnited States Department of Agriculture-Agricultural Research Service, Western Regional Research Center, Albany, California, 94710, USA. yong.gu@ars.usda.gov.
United States Department of Agriculture · USChinese Academy of Sciences · CNUniversity of California, Davis · USUniversity of California System · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Wheat Gli-2 loci encode complex groups of α-gliadin prolamins that are important for breadmaking, but also major triggers of celiac disease (CD). Elucidation of α-gliadin evolution provides knowledge to produce wheat with better end-use properties and reduced immunogenic potential. The Gli-2 loci contain a large number of tandemly duplicated genes and highly repetitive DNA, making sequence assembly of their genomic regions challenging. Here, we constructed high-quality sequences spanning the three wheat homeologous α-gliadin loci by aligning PacBio-based sequence contigs with BioNano genome maps. A total of 47 α-gliadin genes were identified with only 26 encoding intact full-length protein products. Analyses of α-gliadin loci and phylogenetic tree reconstruction indicate significant duplications of α-gliadin genes in the last ~2.5 million years after the divergence of the A, B and D genomes, supporting its rapid lineage-independent expansion in different Triticeae genomes. We showed that dramatic divergence in expression of α-gliadin genes could not be attributed to sequence variations in the promoter regions. The study also provided insights into the evolution of CD epitopes and identified a single indel event in the hexaploid wheat D genome that likely resulted in the generation of the highly toxic 33-mer CD epitope.

Indexed as

Evolution, MolecularAmino Acid SequenceCeliac DiseaseChromosome MappingEpitopesGenome, PlantGenomicsGliadinHumansPolyploidyProlaminsSequence AlignmentSequence Analysis, DNATriticumEpitopesGliadinProlamins

Identifiers

PMID29581476
PMCPMC5980091
OpenAlexW2807562835

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.