Evidence map›Paper›PMID 29064391›Full record

ArticleInternational journal of molecular sciences2017

Transcriptomic Analysis of Gibberellin- and Paclobutrazol-Treated Rice Seedlings under Submergence.

Jing Xiang, Hui Wu, Yuping Zhang, Yikai Zhang, Yifeng Wang, Zhiyong Li, Haiyan Lin, Huizhe Chen, Jian Zhang, Defeng Zhu

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
8.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 35 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Jing XiangState Key Lab of Rice Biology, China National Rice Research Institute, Hangzhou 311400, China. xiangjing_823@163.com.
Hui WuState Key Lab of Rice Biology, China National Rice Research Institute, Hangzhou 311400, China. wuhuiscience@163.com.
Yuping ZhangState Key Lab of Rice Biology, China National Rice Research Institute, Hangzhou 311400, China. cnrrizyp@163.com.
Yikai ZhangState Key Lab of Rice Biology, China National Rice Research Institute, Hangzhou 311400, China. Yikaizhang168@163.com.
Yifeng WangState Key Lab of Rice Biology, China National Rice Research Institute, Hangzhou 311400, China. wangyifeng@caas.cn.
Zhiyong LiState Key Lab of Rice Biology, China National Rice Research Institute, Hangzhou 311400, China. lzhy1418@163.com.
Haiyan LinYuan LongPing High-TechAgriculture Co., Ltd., Changsha 410001, China. linhaiyan@188.com.
Huizhe ChenState Key Lab of Rice Biology, China National Rice Research Institute, Hangzhou 311400, China. chenhuizhe@163.com.
Jian ZhangState Key Lab of Rice Biology, China National Rice Research Institute, Hangzhou 311400, China. zhangjian@caas.cn.ORCID 0000-0003-2804-0162
Defeng ZhuState Key Lab of Rice Biology, China National Rice Research Institute, Hangzhou 311400, China. zhudfcnrri@gmail.com.
China National Rice Research Institute · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Submergence stress is a limiting factor for rice growing in rainfed lowland areas of the world. It is known that the phytohormone gibberellin (GA) has negative effects on submergence tolerance in rice, while its inhibitor paclobutrazol (PB) does the opposite. However, the physiological and molecular basis underlying the GA- and PB-regulated submergence response remains largely unknown. In this study, we reveal that PB could significantly enhance rice seedling survival by retaining a higher level of chlorophyll content and alcohol dehydrogenase activity, and decelerating the consumption of non-structure carbohydrate when compared with the control and GA-treated samples. Further transcriptomic analysis identified 3936 differentially expressed genes (DEGs) among the GA- and PB-treated samples and control, which are extensively involved in the submergence and other abiotic stress responses, phytohormone biosynthesis and signaling, photosynthesis, and nutrient metabolism. The results suggested that PB enhances rice survival under submergence through maintaining the photosynthesis capacity and reducing nutrient metabolism. Taken together, the current study provided new insight into the mechanism of phytohormone-regulated submergence response in rice.

Indexed as

Gene Expression ProfilingGene Expression Regulation, PlantGibberellinsHigh-Throughput Nucleotide SequencingOryzaPlant ProteinsReal-Time Polymerase Chain ReactionRNA, PlantSeedlingsSequence Analysis, RNATriazolesGibberellinspaclobutrazolPlant ProteinsRNA, PlantTriazolesgibberellic acidpaclobutrazolrice (Oryza sativa L.)submergencetranscriptome

Identifiers

PMID29064391
PMCPMC5666904
OpenAlexW2766166349

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.