Evidence map›Paper›PMID 27608711›Full record

ArticleBMC veterinary research2016

Evidence for the presence of African swine fever virus in an endemic region of Western Kenya in the absence of any reported outbreak.

Lian F Thomas, Richard P Bishop, Cynthia Onzere, Michael T Mcintosh, Karissa A Lemire, William A de Glanville, E Anne J Cook, Eric M Fèvre

Open access · goldAbstract read
In one paragraph

Article in BMC veterinary research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
10.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it, 41 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Lian F ThomasCentre for Infection Immunity, and Evolution, Institute for Immunology and Infection Research, School of Biological Sciences, University of Edinburgh, Ashworth Labs, West Mains Rd, Edinburgh, EH9 3JT, UK.
Richard P BishopInternational Livestock Research Institute, PO Box 30709, Nairobi, 00100, Kenya.
Cynthia OnzereInternational Livestock Research Institute, PO Box 30709, Nairobi, 00100, Kenya.
Michael T McintoshUnited States Department of Agriculture, Foreign Animal Disease Diagnostic Laboratory, National Veterinary Services Laboratories, Animal and Plant Health Inspection Services, PO Box 848, Greenport, NY, 1944, USA.
Karissa A LemireUnited States Department of Agriculture, Foreign Animal Disease Diagnostic Laboratory, National Veterinary Services Laboratories, Animal and Plant Health Inspection Services, PO Box 848, Greenport, NY, 1944, USA.
William A de GlanvilleCentre for Infection Immunity, and Evolution, Institute for Immunology and Infection Research, School of Biological Sciences, University of Edinburgh, Ashworth Labs, West Mains Rd, Edinburgh, EH9 3JT, UK.
E Anne J CookCentre for Infection Immunity, and Evolution, Institute for Immunology and Infection Research, School of Biological Sciences, University of Edinburgh, Ashworth Labs, West Mains Rd, Edinburgh, EH9 3JT, UK.
Eric M FèvreInternational Livestock Research Institute, PO Box 30709, Nairobi, 00100, Kenya. Eric.Fevre@liverpool.ac.uk.
International Livestock Research Institute · KEAnimal and Plant Health Inspection Service · USUnited States Department of Agriculture · USUniversity of Edinburgh · GB

Funding

Biotechnology and Biological Sciences Research Council BB/L019019/1Wellcome Trust 085308Wellcome Trust 095831
6 · The paper itself

Abstract

backgroundAfrican swine fever (ASF), caused by African swine fever virus (ASFV), is a severe haemorrhagic disease of pigs, outbreaks of which can have a devastating impact upon commercial and small-holder pig production. Pig production in western Kenya is characterised by low-input, free-range systems practised by poor farmers keeping between two and ten pigs. These farmers are particularly vulnerable to the catastrophic loss of livestock assets experienced in an ASF outbreak. This study wished to expand our understanding of ASFV epidemiology during a period when no outbreaks were reported.

resultsTwo hundred and seventy six whole blood samples were analysed using two independent conventional and real time PCR assays to detect ASFV. Despite no recorded outbreak of clinical ASF during this time, virus was detected in 90/277 samples analysed by conventional PCR and 142/209 samples analysed by qPCR. Genotyping of a sub-set of these samples indicated that the viruses associated with the positive samples were classified within genotype IX and that these strains were therefore genetically similar to the virus associated with the 2006/2007 ASF outbreaks in Kenya.

conclusionThe detection of ASFV viral DNA in a relatively high number of pigs delivered for slaughter during a period with no reported outbreaks provides support for two hypotheses, which are not mutually exclusive: (1) that virus prevalence may be over-estimated by slaughter-slab sampling, relative to that prevailing in the wider pig population; (2) that sub-clinical, chronically infected or recovered pigs may be responsible for persistence of the virus in endemic areas.

Indexed as

African Swine FeverAfrican Swine Fever VirusAnimalsDisease OutbreaksGenotypeKenyaSwineAfrican swine fever virusASFV real time PCREpidemiologyGenotype IXKenyap72 PCRSlaughter house

Identifiers

PMID27608711
PMCPMC5016997
OpenAlexW2513192322

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.