Evidence map›Paper›PMID 27036139›Full record

ArticleBMC biotechnology2016

Identification and functional evaluation of the reductases and dehydrogenases from Saccharomyces cerevisiae involved in vanillin resistance.

Xinning Wang, Zhenzhen Liang, Jin Hou, Xiaoming Bao, Yu Shen

Open access · goldAbstract read
In one paragraph

Article in BMC biotechnology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
7.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 66 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Biosynthesis of vanillin by different microorganisms: a review.World journal of microbiology & biotechnology · 2022
    Review
  11. Article
  12. Article
  13. Article
  14. Impact of Lignocellulose Pretreatment By-Products onMolecules (Basel, Switzerland) · 2021
    Article
  15. Plants (Basel, Switzerland) · 2021
    Article
  16. Article
  17. Effect of a Novel Alpha/Beta Hydrolase Domain Protein on Tolerance ofFrontiers in bioengineering and biotechnology · 2020
    Article
  18. Bacterial conversion of depolymerized Kraft lignin.Biotechnology for biofuels · 2019
    Article
  19. Heterozygous diploid structure ofBiotechnology for biofuels · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Xinning WangState Key Laboratory of Microbial Technology, Shandong University, Shan Da Nan Road 27, Jinan, 250100, China.
Zhenzhen LiangState Key Laboratory of Microbial Technology, Shandong University, Shan Da Nan Road 27, Jinan, 250100, China.
Jin HouState Key Laboratory of Microbial Technology, Shandong University, Shan Da Nan Road 27, Jinan, 250100, China.
Xiaoming BaoState Key Laboratory of Microbial Technology, Shandong University, Shan Da Nan Road 27, Jinan, 250100, China. bxm@sdu.edu.cn.
Yu ShenState Key Laboratory of Microbial Technology, Shandong University, Shan Da Nan Road 27, Jinan, 250100, China. shenyu@sdu.edu.cn.
Shandong University · CNState Key Laboratory of Microbial Technology

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundVanillin, a type of phenolic released during the pre-treatment of lignocellulosic materials, is toxic to microorganisms and therefore its presence inhibits the fermentation. The vanillin can be reduced to vanillyl alcohol, which is much less toxic, by the ethanol producer Saccharomyces cerevisiae. The reducing capacity of S. cerevisiae and its vanillin resistance are strongly correlated. However, the specific enzymes and their contribution to the vanillin reduction are not extensively studied. In our previous work, an evolved vanillin-resistant strain showed an increased vanillin reduction capacity compared with its parent strain. The transcriptome analysis suggested the reductases and dehydrogenases of this vanillin resistant strain were up-regulated. Using this as a starting point, 11 significantly regulated reductases and dehydrogenases were selected in the present work for further study. The roles of these reductases and dehydrogenases in the vanillin tolerance and detoxification abilities of S. cerevisiae are described.

resultsAmong the candidate genes, the overexpression of the alcohol dehydrogenase gene ADH6, acetaldehyde dehydrogenase gene ALD6, glucose-6-phosphate 1-dehydrogenase gene ZWF1, NADH-dependent aldehyde reductase gene YNL134C, and aldo-keto reductase gene YJR096W increased 177, 25, 6, 15, and 18 % of the strain μmax in the medium containing 1 g L(-1) vanillin. The in vitro detected vanillin reductase activities of strain overexpressing ADH6, YNL134C and YJR096W were notably higher than control. The vanillin specific reduction rate increased by 8 times in ADH6 overexpressed strain but not in YNL134C and YJR096W overexpressed strain. This suggested that the enzymes encoded by YNL134C and YJR096W might prefer other substrate and/or could not show their effects on vanillin on the high background of Adh6p in vivo. Overexpressing ALD6 and ZWF1 mainly increased the [NADPH]/[NADP(+)] and [GSH]/[GSSG] ratios but not the vanillin reductase activities. Their contribution to strain growth and vanillin reduction were balancing the redox state of strain when vanillin was presented.

conclusionsBeside the reported Adh6p, the enzymes encoded by YNL134C and YJR096W were proved to have vanillin reduction activity in present study. While ALD6 and ZWF1 did not directly reduce vanillin to vanillyl alcohol, their contribution to vanillin resistance primarily depended on the enhancement of the reducing equivalent supply.

Indexed as

Alcohol DehydrogenaseBenzaldehydesFermentationNADPOxidoreductasesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsUp-RegulationAlcohol DehydrogenaseBenzaldehydesNADPOxidoreductasesSaccharomyces cerevisiae ProteinsvanillinADH6Budding yeastVanillin toleranceYJR096WYNL134C

Identifiers

PMID27036139
PMCPMC4818428
OpenAlexW2328112974

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.