Evidence map›Paper›PMID 26694855›Full record

ArticleBiochemistry2016

Analysis of the Amyloidogenic Potential of Pufferfish (Takifugu rubripes) Islet Amyloid Polypeptide Highlights the Limitations of Thioflavin-T Assays and the Difficulties in Defining Amyloidogenicity.

Amy G Wong, Chun Wu, Eleni Hannaberry, Matthew D Watson, Joan-Emma Shea, Daniel P Raleigh

Abstract read
In one paragraph

Article in Biochemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 59 citations in OpenAlex.

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  4. Mammals that can develop type 2 diabetes have a similarly structured β-sheet amyloid oligomer.Proceedings of the National Academy of Sciences of the United States of America · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Amy G WongDepartment of Chemistry, Stony Brook University , Stony Brook, New York 11794-3400, United States.
Chun WuDepartment of Chemistry and Biochemistry, University of California at Santa Barbara , Santa Barbara, California 93106-9510, United States.
Eleni HannaberryDepartment of Chemistry, Stony Brook University , Stony Brook, New York 11794-3400, United States.
Matthew D WatsonDepartment of Chemistry, Stony Brook University , Stony Brook, New York 11794-3400, United States.
Joan-Emma SheaDepartment of Chemistry and Biochemistry, University of California at Santa Barbara , Santa Barbara, California 93106-9510, United States.
Daniel P RaleighDepartment of Chemistry, Stony Brook University , Stony Brook, New York 11794-3400, United States.
Stony Brook University · USUniversity of California, Santa Barbara · US

Funding

Biophysical Studies of Amyloid Formation by Polypeptide HormonesR01GM078114 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI RALEIGH, DANIEL P · 2008 to 2024
$5.1M
NIGMS NIH HHS GM078114NIGMS NIH HHS R01 GM078114
6 · The paper itself

Abstract

Islet amyloid polypeptide (IAPP, amylin) forms pancreatic amyloid in type-2 diabetes, a process that contributes to the loss of β-cell mass in the disease. IAPP has been found in all higher organisms examined, but not all species form amyloid and the ability to do so correlates with the primary sequence. The amyloidogenic potential of fish IAPPs has not been examined, although fish have been proposed as a source for xenobiotic transplantation. The sequence of pufferfish IAPP (Takifugu rubripes) is known and is the most divergent from human IAPP of any reported IAPP sequence, differing at 11 positions including seven located within residues 20-29, a segment of the molecule that is important for controlling amyloidogenicity. Several of the substitutions found in pufferfish IAPP are nonconservative including Ser to Pro, Asn to Thr, Ala to Tyr, and Leu to Tyr replacements, and several of these have not been reported in mammalian IAPP sequences. Amyloid prediction programs give conflicting results for pufferfish IAPP. CD spectroscopy, FTIR, and transmission electron microscopy reveal that pufferfish IAPP forms amyloid and does so more rapidly than human IAPP in tris buffer at pH 7.4, but does so more slowly in phosphate buffered saline (PBS) at pH 7.4. Molecular dynamics simulations indicate that the pufferfish sequence is compatible with models of IAPP amyloid. The fish polypeptide does not significantly bind to thioflavin-T in tris and does so only weakly in PBS. The results highlight difficulties with thioflavin-T assays and the ambiguity in defining amyloidogenicity.

Indexed as

Amino Acid SequenceAmyloidAnimalsBenzothiazolesBiological AssayBuffersFish ProteinsFluorescent DyesHumansIslet Amyloid PolypeptideMolecular Dynamics SimulationMolecular Sequence DataProtein BindingSpecies SpecificityTetraodontiformesThiazolesAmyloidBenzothiazolesBuffersFish ProteinsFluorescent DyesIslet Amyloid PolypeptideThiazolesthioflavin T

Identifiers

PMID26694855
PMCPMC5502355
OpenAlexW2233521641

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.