Evidence map›Paper›PMID 26007167›Full record

ArticleMolecules (Basel, Switzerland)2015

Culture Conditions Affect Expression of DUX4 in FSHD Myoblasts.

Sachchida Nand Pandey, Hunain Khawaja, Yi-Wen Chen

Open access · goldAbstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
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  3. IncreasedInternational journal of molecular sciences · 2025
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  10. Review
  11. Article
  12. Review
  13. Membrane Repair Deficit in Facioscapulohumeral Muscular Dystrophy.International journal of molecular sciences · 2020
    Article
  14. Inhibition ofProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  15. Article
  16. Article
  17. PARP1 Differentially Interacts with Promoter region ofJournal of genetic syndromes & gene therapy · 2016
    Article
  18. Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Sachchida Nand PandeyResearch Center for Genetic Medicine, Children's National Medical Center, Washington, DC 20010, USA. spandey@childrensnational.org.
Hunain KhawajaResearch Center for Genetic Medicine, Children's National Medical Center, Washington, DC 20010, USA. HKhawaja@childrensnational.org.
Yi-Wen ChenResearch Center for Genetic Medicine, Children's National Medical Center, Washington, DC 20010, USA. ychen@childrensnational.org.
Children's National · USGeorge Washington University · US

Funding

NCMRR-DC Core Molecular & Functional Outcome Measures in Rehabilitation MedicineR24HD050846 · NICHD · CHILDREN'S RESEARCH INSTITUTE · PI KNOBLACH, SUSAN M · 2005 to 2014
$8.6M
NICHD NIH HHS R24 HD050846NICHD NIH HHS R24HD050846
6 · The paper itself

Abstract

Facioscapulohumeral muscular dystrophy (FSHD) is believed to be caused by aberrant expression of double homeobox 4 (DUX4) due to epigenetic changes of the D4Z4 region at chromosome 4q35. Detecting DUX4 is challenging due to its stochastic expression pattern and low transcription level. In this study, we examined different cDNA synthesis strategies and the sensitivity for DUX4 detection. In addition, we investigated the effects of dexamethasone and knockout serum replacement (KOSR) on DUX4 expression in culture. Our data showed that DUX4 was consistently detected in cDNA samples synthesized using Superscript III. The sensitivity of DUX4 detection was higher in the samples synthesized using oligo(dT) primers compared to random hexamers. Adding dexamethasone to the culture media significantly suppressed DUX4 expression in immortalized (1.3 fold, p < 0.01) and primary (4.7 fold, p < 0.01) FSHD myoblasts, respectively. Culture medium with KOSR increased DUX4 expression and the response is concentration dependent. The findings suggest that detection strategies and culture conditions should be carefully considered when studying DUX4 in cultured cells.

Indexed as

AdultCell Culture TechniquesCells, CulturedDexamethasoneDNA, ComplementaryDNA PrimersHomeodomain ProteinsHumansMaleMiddle AgedMuscle, SkeletalMuscular Dystrophy, FacioscapulohumeralMyoblastsRNA-Directed DNA PolymeraseDexamethasoneDNA, ComplementaryDNA PrimersDUX4L1 protein, humanHomeodomain ProteinsRNA-Directed DNA PolymerasedexamethasoneDUX4FSHDKOSRSuperscript

Identifiers

PMID26007167
PMCPMC6272558
OpenAlexW1524947360

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.