Evidence map›Paper›PMID 25778544›Full record

ArticleVeterinary microbiology2015

Influenza A(H1N1)pdm09 virus in pigs, Togo, 2013.

Mariette F Ducatez, Félix Awoume, Richard J Webby

Open access · greenAbstract read
In one paragraph

Article in Veterinary microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
0.4field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 19 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Review of genome sequencing technologies in molecular characterization of influenza A viruses in swine.Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2022
    Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 3 countries.

Mariette F DucatezINRA, UMR 1225, IHAP, F-31076 Toulouse, France; Université de Toulouse, INP, ENVT, UMR 1225, IHAP, F-31076 Toulouse, France. Electronic address: m.ducatez@envt.fr.
Félix AwoumeLaboratoire National Vétérinaire de Lomé, Lomé, Togo. Electronic address: felixawoume@gmail.com.
Richard J WebbyDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, TN, USA. Electronic address: richard.webby@stjude.org.
École Nationale Vétérinaire de Toulouse · FRSt. Jude Children's Research Hospital · US

Funding

NIAID NIH HHS HHSN266200700005CNIAID NIH HHS HHSN272201400006CNIAID NIH HHS N01 AI070005
6 · The paper itself

Abstract

We collected 325 nasal swabs from freshly slaughtered previously healthy pigs from October 2012 through January 2014 in a slaughterhouse near Lomé in Togo. Influenza A virus genome was detected by RT-PCR in 2.5-12.3% of the pooled samples, and results of hemagglutinin subtyping RT-PCR assays showed the virus in all the positive pools to be A(H1N1)pdm09. Virus was isolated on MDCK cells from a representative specimen, A/swine/Togo/ONA32/2013(H1N1). The isolate was fully sequenced and harbored eight genes similar to A(H1N1)pdm09 virus genes circulating in humans in 2012-2013, suggesting human-to-swine transmission of the pathogen.

Indexed as

AnimalsBase SequenceCell LineDogsHemagglutininsHumansInfluenza A Virus, H1N1 SubtypeMolecular Sequence DataOrthomyxoviridae InfectionsReverse Transcriptase Polymerase Chain ReactionSequence Analysis, DNASwineSwine DiseasesTogoHemagglutininsH1N1Influenza virusInterspecies transmissionPandemicSwineTogo

Identifiers

PMID25778544
PMCPMC4388795
OpenAlexW1988241717

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.