Evidence map›Paper›PMID 24607854›Full record

ArticleMutation research2014

Nucleotide excision repair gene polymorphisms, meat intake and colon cancer risk.

Susan E Steck, Lesley M Butler, Temitope Keku, Samuel Antwi, Joseph Galanko, Robert S Sandler, Jennifer J Hu

Abstract read
In one paragraph

Article in Mutation research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 3 syntheses or guidelines pooled it.

  1. Pooled it
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  9. American journal of translational research · 2019
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  17. Polycyclic aromatic hydrocarbon residues in serum samples of autopsied individuals from Tennessee.International journal of environmental research and public health · 2014
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Susan E SteckDepartment of Epidemiology and Biostatistics, Cancer Prevention and Control Program, Arnold School of Public Health, University of South Carolina, 915 Greene Street, RM 236, Columbia, SC 29208, USA. Electronic address: ssteck@sc.edu.
Lesley M ButlerCancer Control and Population Sciences, University of Pittsburgh Cancer Institute, UPMC Cancer Pavilion, Suite 4C-466, 5150 Centre Avenue, Pittsburgh, PA 15232, USA. Electronic address: BUTLERL3@upmc.edu.
Temitope KekuDivision of Gastroenterology and Hepatology, School of Medicine, University of North Carolina, 103 Mason Farm Road, 7340-C Medical Biomolecular Research Building, CB#7032, Chapel Hill, NC 27599-7032, USA. Electronic address: tokeku@med.unc.edu.
Samuel AntwiDepartment of Epidemiology and Biostatistics, Cancer Prevention and Control Program, Arnold School of Public Health, University of South Carolina, 915 Greene Street, RM 236, Columbia, SC 29208, USA.
Joseph GalankoCancer Epidemiology Gastrointestinal Biology and Disease, School of Medicine, University of North Carolina at Chapel Hill, CB#7555, 4157 Bioinformatics Building, Chapel Hill, NC 27599-7555, USA. Electronic address: galanko@med.unc.edu.
Robert S SandlerCancer Epidemiology Gastrointestinal Biology and Disease, School of Medicine, University of North Carolina at Chapel Hill, CB#7555, 4157 Bioinformatics Building, Chapel Hill, NC 27599-7555, USA. Electronic address: rsandler@med.unc.edu.
Jennifer J HuSylvester Comprehensive Cancer Center and Department of Public Health Sciences, University of Miami Miller School of Medicine, Miami, FL, 33136, USA. Electronic address: JHu@med.miami.edu.

Funding

PILOT AND FEASIBILITY STUDIESP30DK034987 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ROBERT S. SANDLER · 1985 to 2026
$30.5M
Building Interdisciplinary Research Careers in Womens Health at UC Davis - Administrative SupplementK12HD051958 · NICHD · UNIVERSITY OF CALIFORNIA DAVIS · PI LANE, NANCY E · 2005 to 2023
$9.6M
Population Study of Rectal Cancer in Blacks and WhitesR01CA066635 · NCI · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · PI SANDLER, ROBERT S · 1996 to 2005
$4.2M
Molecular Genetics of Colon Cancer in Blacks and WhitesR01CA090898 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI HU, JENNIFER J · 2002 to 2005
$803k
Gene-Nutrient Interactions and Breast CancerK07CA102640 · NCI · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI STECK, SUSAN E · 2003 to 2007
$621k
NCI NIH HHS K07 CA102640NCI NIH HHS K07CA102640NCI NIH HHS R01 CA066635NCI NIH HHS R01 CA090898NCI NIH HHS R01CA090898NCI NIH HHS R01CA66635NICHD NIH HHS 5K12HD051958NICHD NIH HHS K12 HD051958NIDDK NIH HHS P30 DK034987NIDDK NIH HHS P30 DK34987
6 · The paper itself

Abstract

purposeMuch of the DNA damage from colon cancer-related carcinogens, including heterocyclic amines (HCA) and polycyclic aromatic hydrocarbons (PAH) from red meat cooked at high temperature, are repaired by the nucleotide excision repair (NER) pathway. Thus, we examined whether NER non-synonymous single nucleotide polymorphisms (nsSNPs) modified the association between red meat intake and colon cancer risk.

methodsThe study consists of 244 African-American and 311 white colon cancer cases and population-based controls (331 African Americans and 544 whites) recruited from 33 counties in North Carolina from 1996 to 2000. Information collected by food frequency questionnaire on meat intake and preparation methods were used to estimate HCA and benzo(a)pyrene (BaP, a PAH) intake. We tested 7 nsSNPs in 5 NER genes: XPC A499V and K939Q, XPD D312N and K751Q, XPF R415Q, XPG D1104H, and RAD23B A249V. Adjusted odds ratios (OR) and 95% confidence intervals (CI) were calculated using unconditional logistic regression.

resultsAmong African Americans, we observed a statistically significant positive association between colon cancer risk and XPC 499 AV+VV genotype (OR=1.7, 95% CI: 1.1, 2.7, AA as referent), and an inverse association with XPC 939 QQ (OR=0.3, 95%CI: 0.2, 0.8, KK as referent). These associations were not observed among whites. For both races combined, there was interaction between the XPC 939 genotype, well-done red meat intake and colon cancer risk (OR=1.5, 95% CI=1.0, 2.2 for high well-done red meat and KK genotype as compared to low well-done red meat and KK genotype, pinteraction=0.05).

conclusionsOur data suggest that NER nsSNPs are associated with colon cancer risk and may modify the association between well-done red meat intake and colon cancer risk.

Indexed as

DNA RepairPolymorphism, Single NucleotideAdenocarcinomaAdultAgedAged, 80 and overAnimalsBenzopyrenesBlack or African AmericanCarcinogensCattleColonic NeoplasmsCookingDNA-Binding ProteinsFemaleGenotypeBenzopyrenesCarcinogensDNA-Binding ProteinsHeterocyclic CompoundsXPC protein, humanCase-control studyColon cancerDietDNA repairMeatPolymorphism

Identifiers

PMID24607854
PMCPMC4056032

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.