Evidence map›Paper›PMID 9986805›Full record

ArticleJournal of clinical microbiology1999

Detection of viable Mycobacterium tuberculosis by reverse transcriptase-strand displacement amplification of mRNA.

T J Hellyer, L E DesJardin, L Teixeira, M D Perkins, M D Cave, K D Eisenach

Open access · bronzeAbstract read
In one paragraph

Article in Journal of clinical microbiology, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 69 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Review
  5. Heat Inactivation Renders Sputum Safe and PreservesJournal of clinical microbiology · 2019
    Article
  6. The Potential for Testing Stool to Reduce Tuberculosis Missed Diagnoses and Misdiagnoses.The American journal of tropical medicine and hygiene · 2018
    Article
  7. Article
  8. Developments for improved diagnosis of bacterial bloodstream infections.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2014
    Review
  9. Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

T J HellyerDepartments of Pathology, University of Arkansas for Medical Sciences, Little Rock, Arkansas, USA.
L E DesJardin
L Teixeira
M D Perkins
M D Cave
K D Eisenach
Universidade Federal do Espírito Santo · BRBipar · FRUniversity of Arkansas for Medical Sciences · US

Funding

TUBERCULOSIS RESEARCH UNITN01AI045244 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI BOAM, HENRY · 1994 to 1999
–
NIAID NIH HHS N01 AI045244NIAID NIH HHS N01-AI45244
6 · The paper itself

Abstract

Numerous assays have been described for the detection of DNA and rRNA sequences that are specific for the Mycobacterium tuberculosis complex. Although beneficial to initial diagnosis, such assays have proven unsuitable for monitoring therapeutic efficacy owing to the persistence of these nucleic acid targets long after conversion of smears and cultures to negative. However, prokaryotic mRNA has a typical half-life of only a few minutes and we have previously shown that the presence of mRNA is a good indicator of bacterial viability. The purpose of the present study was to develop a novel reverse transcriptase-strand displacement amplification system for the detection of M. tuberculosis alpha-antigen (85B protein) mRNA and to demonstrate the use of this assay in assessing chemotherapeutic efficacy in patients with pulmonary tuberculosis. The assay was applied to sequential, noninduced sputum specimens collected from four patients: 10 of 11 samples (91%) collected prior to the start of therapy were positive for alpha-antigen mRNA, compared with 1 of 8 (13%), 2 of 8 (25%), 2 of 8 (25%), and 0 of 8 collected on days 2, 4, 7, and 14 of treatment, respectively. In contrast, 39 of 44 samples (89%) collected on or before day 14 were positive for alpha-antigen DNA. The loss of detectable mRNA corresponded to a rapid drop over the first 4 days of treatment in the number of viable organisms present in each sputum sample, equivalent to a mean fall of 0.43 log10 CFU/ml/day. Analysis of mRNA is a potentially useful method for monitoring therapeutic efficacy and for rapid in vitro determination of drug susceptibility.

Indexed as

AcyltransferasesNucleic Acid Amplification TechniquesAntigens, BacterialAntitubercular AgentsBacterial ProteinsBase SequenceDNA, BacterialDNA PrimersHalf-LifeHumansMycobacterium tuberculosisRNA, MessengerSputumTime FactorsTuberculosisAcyltransferasesantigen 85B, Mycobacterium tuberculosisAntigens, BacterialAntitubercular AgentsBacterial ProteinsDNA, BacterialDNA PrimersRNA, Messenger

Identifiers

PMID9986805
PMCPMC84447
OpenAlexW2099652589

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.