Evidence map›Paper›PMID 9916079›Full record

ArticleInfection and immunity1999

Characterization of a novel methyl-accepting chemotaxis gene, dmcB, from the oral spirochete Treponema denticola.

H Li, S Arakawa, Q D Deng, H Kuramitsu

Open access · bronzeAbstract read
In one paragraph

Article in Infection and immunity, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
  3. Treponema denticola interactions with host proteins.Journal of oral microbiology · 2012
    Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Asymmetrical flagellar rotation in Borrelia burgdorferi nonchemotactic mutants.Proceedings of the National Academy of Sciences of the United States of America · 2002
    Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

H LiDepartment of Oral Biology, State University of New York, Buffalo, New York 14214, USA.
S Arakawa
Q D Deng
H Kuramitsu
University at Buffalo, State University of New York · US

Funding

ORAL SPIROCHETES--MOLECULAR GENETICS ANALYSISR01DE009821 · NIDCR · UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT · PI SHARMA, ASHU · 1992 to 2004
$1.0M
NIDCR NIH HHS DE09821NIDCR NIH HHS R01 DE009821
6 · The paper itself

Abstract

Immediately downstream from the previously isolated Treponema denticola ATCC 35405 prtB gene coding for a chymotrypsinlike protease activity, an open reading frame, ORF3, was identified which shared significant homology with the highly conserved domains (HCDs) of bacterial methyl-accepting chemotaxis proteins (MCPs). Nucleotide sequencing of this ORF revealed that the gene would code for a protein with a size of approximately 41 kDa. In addition, this sequence contained a domain which was virtually identical to the HCD of a recently characterized MCP, DmcA, of strain 35405. Therefore, this ORF was named dmcB. Northern blot analysis suggested that dmcB was part of an operon structure containing prtB. Insertional inactivation of dmcB utilizing an ermF-ermAM cassette resulted in a mutant with decreased chemoattraction toward nutrient supplements. In addition, the mutant displayed an altered pattern of methylated proteins under conditions of chemotaxis. Inactivation of the dmcB gene also attenuated the methylation of the DmcA protein. These results suggest that the dmcB gene codes for an MCP in T. denticola which may interact with other MCPs in these organisms.

Indexed as

Amino Acid SequenceBase SequenceChemotaxisDNA, BacterialEscherichia coliGene ExpressionHumansMolecular Sequence DataMouthMutagenesisOpen Reading FramesSequence Homology, Amino AcidTranscription, GeneticTreponemaDNA, Bacterial

Identifiers

PMID9916079
PMCPMC96375
OpenAlexW1938335355

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.