Evidence map›Paper›PMID 9915944›Full record

ArticleAmerican journal of human genetics1999

LINE-1 elements at the sites of molecular rearrangements in Alport syndrome-diffuse leiomyomatosis.

Y Segal, B Peissel, A Renieri, M de Marchi, A Ballabio, Y Pei, J Zhou

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 112 citations in OpenAlex.

  1. UTERINE FIBROIDS.Physiological reviews · 2025
    Review
  2. Article
  3. Transposable elements in human genetic disease.Nature reviews. Genetics · 2019
    Review
  4. Transposable element-mediated structural variation analysis in dog breeds using whole-genome sequencing.Mammalian genome : official journal of the International Mammalian Genome Society · 2019
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. LINE-1 elements in structural variation and disease.Annual review of genomics and human genetics · 2011
    Review
  14. Article
  15. Article
  16. Retroelements and their impact on genome evolution and functioning.Cellular and molecular life sciences : CMLS · 2009
    Review
  17. The human genome in the LINE of fire.Proceedings of the National Academy of Sciences of the United States of America · 2008
    Review
  18. L1 recombination-associated deletions generate human genomic variation.Proceedings of the National Academy of Sciences of the United States of America · 2008
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Y SegalRenal Division, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115, USA.
B Peissel
A Renieri
M de Marchi
A Ballabio
Y Pei
J Zhou
Brigham and Women's Hospital · USUniversity of Siena · ITTelethon Institute Of Genetics And Medicine · ITUniversity of Toronto · CA

Funding

Telethon TGM06S01Telethon TGM97000
6 · The paper itself

Abstract

Deletions encompassing the 5' termini of the paired type IV collagen genes COL4A5 and COL4A6 on chromosome Xq22 give rise to Alport syndrome (AS) and associated diffuse leiomyomatosis (DL), a syndrome of disseminated smooth-muscle tumors involving the esophagus, large airways, and female reproductive tract. In this study, we report isolation and characterization of two deletion junctions. The first, in a patient described elsewhere, arose by a nonhomologous recombination event fusing a LINE-1 (L1) repetitive element in intron 1 of COL4A5 to intron 2 of COL4A6, resulting in a 13.4-kb deletion. The second, in a previously undescribed family, arose by unequal homologous recombination between the same L1 and a colinear L1 element in intron 2 of COL4A6, resulting in a>40-kb deletion. L1 elements have contributed to the emergence of this locus as a site of frequent recombinations by diverse mechanisms. These give rise to AS-DL by disruption of type IV collagen and perhaps other as yet unidentified genes, evidenced by deletions as small as 13.4 kb.

Indexed as

Long Interspersed Nucleotide ElementsX ChromosomeAdultBase SequenceBiopsyCollagenFemaleFluorescent Antibody TechniqueHumansImmunophenotypingMaleMiddle AgedMolecular Sequence DataNephritis, HereditaryPedigreeSkinCollagen

Identifiers

PMID9915944
PMCPMC1377703
OpenAlexW1976272331

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.