Evidence map›Paper›PMID 9892658›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America1999

Kinetic evidence for an on-pathway intermediate in the folding of cytochrome c.

Y Bai

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 62 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. A unified mechanism for protein folding: predetermined pathways with optional errors.Protein science : a publication of the Protein Society · 2007
    Article
  7. Article
  8. A PDZ domain recapitulates a unifying mechanism for protein folding.Proceedings of the National Academy of Sciences of the United States of America · 2007
    Article
  9. A protein folding pathway with multiple folding intermediates at atomic resolution.Proceedings of the National Academy of Sciences of the United States of America · 2005
    Article
  10. The 40s Omega-loop plays a critical role in the stability and the alkaline conformational transition of cytochrome c.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2004
    Article
  11. Demonstration of a low-energy on-pathway intermediate in a fast-folding protein by kinetics, protein engineering, and simulation.Proceedings of the National Academy of Sciences of the United States of America · 2004
    Article
  12. Cytochrome c folding pathway: kinetic native-state hydrogen exchange.Proceedings of the National Academy of Sciences of the United States of America · 2002
    Article
  13. Folding and signaling share the same pathway in a photoreceptor.Proceedings of the National Academy of Sciences of the United States of America · 2001
    Article
  14. An amino acid code for protein folding.Proceedings of the National Academy of Sciences of the United States of America · 2001
    Article
  15. Article
  16. An essential intermediate in the folding of dihydrofolate reductase.Proceedings of the National Academy of Sciences of the United States of America · 2000
    Article
  17. Kinetic evidence of an on-pathway intermediate in the folding of lysozyme.Protein science : a publication of the Protein Society · 2000
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author at 1 institution in 1 country.

Y BaiLaboratory of Biochemistry, National Cancer Institute, National Institutes of Health, Building 37, Room 4A-01, Bethesda, MD 20892, USA. yawen@helix.nih.gov
National Cancer Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

An early folding event of cytochrome c populates a helix-containing intermediate (INC) because of a pH-dependent misligation between the heme iron and nonnative ligands in the unfolded state (U). For folding to proceed, the nonnative ligation error must first be corrected. It is not known whether I is on-pathway, with folding to the native state (N) as in U <-->INC <--> N, or whether the I must first move back through the U and then fold to the N through some alternative path (INC <--> U <--> N). By means of a kinetic test, it is shown here that the cytochrome c I does not first unfold to U. The method used provides an experimental criterion for rejecting the off-pathway I <--> U <--> N option.

Indexed as

Protein FoldingAnimalsCytochrome c GroupGuanidineHorsesHydrogen-Ion ConcentrationKineticsMyocardiumProtein DenaturationSpectrophotometryThermodynamicsCytochrome c GroupGuanidine

Identifiers

PMID9892658
PMCPMC15161
OpenAlexW2113867108

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.