Evidence map›Paper›PMID 9874576›Full record

ArticleThe Journal of experimental medicine1999

Molecular recognition of lipid antigens by T cell receptors.

E P Grant, M Degano, J P Rosat, S Stenger, R L Modlin, I A Wilson, S A Porcelli, M B Brenner

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 166 citations in OpenAlex.

  1. Article
  2. Characterization ofJournal of immunology (Baltimore, Md. : 1950) · 2022
    Article
  3. Review
  4. Article
  5. A TCR β-Chain Motif Biases toward Recognition of Human CD1 Proteins.Journal of immunology (Baltimore, Md. : 1950) · 2019
    Article
  6. Molecular recognition of microbial lipid-based antigens by T cells.Cellular and molecular life sciences : CMLS · 2018
    Review
  7. Article
  8. How T cells grasp mycobacterial lipid antigens.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  9. Article
  10. Review
  11. Article
  12. Lipid and small-molecule display by CD1 and MR1.Nature reviews. Immunology · 2015
    Review
  13. Donor Unrestricted T Cells: A Shared Human T Cell Response.Journal of immunology (Baltimore, Md. : 1950) · 2015
    Review
  14. Article
  15. Article
  16. Lipid antigens in immunity.Biological chemistry · 2014
    Review
  17. Article
  18. Article
  19. Immunological cells and functions in Gaucher disease.Critical reviews in oncogenesis · 2013
    Review
  20. Article

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

E P GrantLymphocyte Biology Section, Division of Rheumatology, Immunology, and Allergy, Department of Medicine, Brigham & Women's Hospital and Harvard Medical School, Boston, Massachusetts 02115, USA.
M Degano
J P Rosat
S Stenger
R L Modlin
I A Wilson
S A Porcelli
M B Brenner
Scripps Research Institute · US

Funding

Molecular Analysis of the Host Immune Response in LeprosyR01AI022553 · NIAID · UNIVERSITY OF SOUTHERN CALIFORNIA · PI ROBERT L MODLIN · 1989 to 2026
$15.7M
TCR GAMMA/DELTA LYMPHOCYTES IN HUMAN SKIN LESIONSR01AR040312 · NIAMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI MODLIN, ROBERT L · 1990 to 2025
$10.4M
T LYMPOHOCYTE RECOGNITIONR01AI028973 · NIAID · DANA-FARBER CANCER INSTITUTE · PI BRENNER, MICHAEL B. · 1990 to 2014
$4.5M
STRUCTURAL IMMUNOLOGY OF MOUSE MHC CLASS IR01CA058896 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI WILSON, IAN A · 1994 to 2010
$3.9M
T LYMPHOCYTE RECOGNITIONR37AI028973 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI BRENNER, MICHAEL B · 1995 to 2004
$1.7M
IMMUNOREGULATORY T-LYMPHOCYTES IN LEPROSY SKIN LESIONSR22AI022553 · NIAID · UNIVERSITY OF SOUTHERN CALIFORNIA · PI MODLIN, ROBERT L · 1986 to 1991
–
NCI NIH HHS CA52296NCI NIH HHS R01 CA058896NIAID NIH HHS AI22553NIAID NIH HHS AI28973NIAID NIH HHS R01 AI022553NIAID NIH HHS R01 AI028973NIAID NIH HHS R37 AI028973NIAMS NIH HHS R01 AR040312
6 · The paper itself

Abstract

The T cell antigen receptor (TCR) mediates recognition of peptide antigens bound in the groove of major histocompatibility complex (MHC) molecules. This dual recognition is mediated by the complementarity-determining residue (CDR) loops of the alpha and beta chains of a single TCR which contact exposed residues of the peptide antigen and amino acids along the MHC alpha helices. The recent description of T cells that recognize hydrophobic microbial lipid antigens has challenged immunologists to explain, in molecular terms, the nature of this interaction. Structural studies on the murine CD1d1 molecule revealed an electrostatically neutral putative antigen-binding groove beneath the CD1 alpha helices. Here, we demonstrate that alpha/beta TCRs, when transferred into TCR-deficient recipient cells, confer specificity for both the foreign lipid antigen and CD1 isoform. Sequence analysis of a panel of CD1-restricted, lipid-specific TCRs reveals the incorporation of template-independent N nucleotides that encode diverse sequences and frequent charged basic residues at the V(D)J junctions. These sequences permit a model for recognition in which the TCR CDR3 loops containing charged residues project between the CD1 alpha helices, contacting the lipid antigen hydrophilic head moieties as well as adjacent CD1 residues in a manner that explains antigen specificity and CD1 restriction.

Indexed as

AnimalsAntigensAntigens, CD1Clone CellsCloning, MolecularHumansLipidsMiceModels, MolecularPolymerase Chain ReactionProtein Structure, SecondaryReceptors, Antigen, T-CellT-LymphocytesTransfectionAntigensAntigens, CD1LipidsReceptors, Antigen, T-Cell

Identifiers

PMID9874576
PMCPMC1887682
OpenAlexW2028747390

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.