ArticleGenome research1998
Scriptable access to the Caenorhabditis elegans genome sequence and other ACEDB databases.
Article in Genome research, 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
24 citing papers in PubMed.
- PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools.Nucleic acids research · 2014Article
- Cell interactions and patterned intercalations shape and link epithelial tubes in C. elegans.PLoS genetics · 2013Article
- WormBase 2012: more genomes, more data, new website.Nucleic acids research · 2012Article
- MatrixDB, a database focused on extracellular protein-protein and protein-carbohydrate interactions.Bioinformatics (Oxford, England) · 2009Article
- UTRome.org: a platform for 3'UTR biology in C. elegans.Nucleic acids research · 2008Article
- Article
- WormBase: new content and better access.Nucleic acids research · 2007Article
- SPODOBASE: an EST database for the lepidopteran crop pest Spodoptera.BMC bioinformatics · 2006Article
- WormBase: better software, richer content.Nucleic acids research · 2006Article
- WormBase: a comprehensive data resource for Caenorhabditis biology and genomics.Nucleic acids research · 2005Article
- BioMediator data integration: beyond genomics to neuroscience data.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2005Article
- WormBase as an integrated platform for the C. elegans ORFeome.Genome research · 2004Article
- An overview of Ensembl.Genome research · 2004Review
- TropGENE-DB, a multi-tropical crop information system.Nucleic acids research · 2004Article
- AppaDB: an AcedB database for the nematode satellite organism Pristionchus pacificus.Nucleic acids research · 2004Article
- RNAiDB and PhenoBlast: web tools for genome-wide phenotypic mapping projects.Nucleic acids research · 2004Article
- Maize-targeted mutagenesis: A knockout resource for maize.Proceedings of the National Academy of Sciences of the United States of America · 2003Article
- Arabidopsis contains a large superfamily of acyl-activating enzymes. Phylogenetic and biochemical analysis reveals a new class of acyl-coenzyme a synthetases.Plant physiology · 2003Article
- Assessment of SAGE in transcript identification.Genome research · 2003Article
- The SNP Consortium website: past, present and future.Nucleic acids research · 2003Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
2 authors.
Funding
Abstract
Much of the world's genomic data are available to the community through networked databases that are accessed via Web interfaces. Although this paradigm provides browse-level access and has greatly facilitated linking between databases, it does not provide any convenient mechanism for programmatically fetching and integrating data from diverse databases. We have created a library and an application programming interface (API) named AcePerl that provides simple, direct access to ACEDB databases from the Perl programming language. With this library, programmers and computer-savvy biologists can write software to pose complex queries on local and remote ACEDB databases, retrieve the data, integrate the results, and move data objects from one database to another. In addition, a set of Web scripts running on top of AcePerl provides Web-based browsing of any local or remote ACEDB database. AcePerl and the AceBrowser Web browser run on Unix systems and are available under a license that allows for unrestricted use and redistribution. Both packages can be downloaded from URL. A Microsoft Windows port of AcePerl is in the planning stages.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.