Evidence map›Paper›PMID 9861008›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America1998

Analysis of variable (diversity) joining recombination in DNAdependent protein kinase (DNA-PK)-deficient mice reveals DNA-PK-independent pathways for both signal and coding joint formation.

M A Bogue, C Jhappan, D B Roth

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 87 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Review
  6. Effects of theGenes and environment : the official journal of the Japanese Environmental Mutagen Society · 2020
    Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Ataxia telangiectasia mutated (Atm) and DNA-PKcs kinases have overlapping activities during chromosomal signal joint formation.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. The catalytic subunit of DNA-protein kinase (DNA-PKcs) is not required for Ig class-switch recombination.Proceedings of the National Academy of Sciences of the United States of America · 2007
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

M A BogueDepartment of Microbiology and Immunology, Baylor College of Medicine, Houston, TX 77030, USA.
C Jhappan
D B Roth
National Institutes of Health · USNational Cancer Institute · US

Funding

Mechanisms of V(D) J RecombinationR01AI036420 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ROTH, DAVID B. · 1994 to 2009
$2.6M
XRCC5 MUTANT MICE AND CELL LINESR01CA076317 · NCI · UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT · PI HASTY, EDWARD PAUL · 1997 to 2005
$1.0M
NCI NIH HHS CA-76317NCI NIH HHS R01 CA076317NIAID NIH HHS AI-36420NIAID NIH HHS R01 AI036420
6 · The paper itself

Abstract

Previous studies have suggested that ionizing radiation causes irreparable DNA double-strand breaks in mice and cell lines harboring mutations in any of the three subunits of DNA-dependent protein kinase (DNA-PK) (the catalytic subunit, DNA-PKcs, or one of the DNA-binding subunits, Ku70 or Ku86). In actuality, these mutants vary in their ability to resolve double-strand breaks generated during variable (diversity) joining [V(D)J] recombination. Mutant cell lines and mice with targeted deletions in Ku70 or Ku86 are severely compromised in their ability to form coding and signal joints, the products of V(D)J recombination. It is noteworthy, however, that severe combined immunodeficient (SCID) mice, which bear a nonnull mutation in DNA-PKcs, are substantially less impaired in forming signal joints than coding joints. The current view holds that the defective protein encoded by the murine SCID allele retains enough residual function to support signal joint formation. An alternative hypothesis proposes that DNA-PKcs and Ku perform different roles in V(D)J recombination, with DNA-PKcs required only for coding joint formation. To resolve this issue, we examined V(D)J recombination in DNA-PKcs-deficient (SLIP) mice. We found that the effects of this mutation on coding and signal joint formation are identical to the effects of the SCID mutation. Signal joints are formed at levels 10-fold lower than in wild type, and one-half of these joints are aberrant. These data are incompatible with the notion that signal joint formation in SCID mice results from residual DNA-PKcs function, and suggest a third possibility: that DNA-PKcs normally plays an important but nonessential role in signal joint formation.

Indexed as

Antigens, NuclearDNA HelicasesAnimalsCell LineCrosses, GeneticDNA-Activated Protein KinaseDNA-Binding ProteinsDNA NucleotidyltransferasesHomozygoteImmunoglobulin Variable RegionKu AutoantigenMiceMice, Inbred BALB CMice, Mutant StrainsMice, SCIDNuclear ProteinsAntigens, NuclearDNA-Activated Protein KinaseDNA-Binding ProteinsDNA HelicasesDNA NucleotidyltransferasesImmunoglobulin Variable RegionKu AutoantigenNuclear ProteinsProtein Serine-Threonine KinasesVDJ RecombinasesXRCC5 protein, humanXrcc5 protein, mouseXrcc6 protein, humanXrcc6 protein, mouse

Identifiers

PMID9861008
PMCPMC28082
OpenAlexW1986990473

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.