Evidence map›Paper›PMID 9860988›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America1998

Comparative studies on mammalian Hoxc8 early enhancer sequence reveal a baleen whale-specific deletion of a cis-acting element.

C S Shashikant, C B Kim, M A Borbély, W C Wang, F H Ruddle

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 64 citations in OpenAlex.

  1. Article
  2. Functional analysis of a first hindlimb positioning enhancer viaFrontiers in cell and developmental biology · 2024
    Article
  3. Article
  4. Theria-specific homeodomain and cis-regulatory element evolution of the Dlx3-4 bigene cluster in 12 different mammalian species.Journal of experimental zoology. Part B, Molecular and developmental evolution · 2012
    Article
  5. Article
  6. Review
  7. Elephant shark (Callorhinchus milii) provides insights into the evolution of Hox gene clusters in gnathostomes.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
  8. Article
  9. Functional evolution of the p53 regulatory network through its target response elements.Proceedings of the National Academy of Sciences of the United States of America · 2008
    Article
  10. Enhancer identification through comparative genomics.Seminars in cell & developmental biology · 2007
    Review
  11. Article
  12. Article
  13. An evolutionary constraint: strongly disfavored class of change in DNA sequence during divergence of cis-regulatory modules.Proceedings of the National Academy of Sciences of the United States of America · 2005
    Article
  14. Article
  15. Divergence of Hoxc8 early enhancer parallels diverged axial morphologies between mammals and fishes.Proceedings of the National Academy of Sciences of the United States of America · 2003
    Article
  16. Phylogenetic analysis of the mammalian Hoxc8 non-coding region.Journal of structural and functional genomics · 2003
    Article
  17. Molecular evolution of the HoxA cluster in the three major gnathostome lineages.Proceedings of the National Academy of Sciences of the United States of America · 2002
    Article
  18. Analysis of a complete homeobox gene repertoire: implications for the evolution of diversity.Proceedings of the National Academy of Sciences of the United States of America · 2000
    Article
  19. Hox cluster genomics in the horn shark, Heterodontus francisci.Proceedings of the National Academy of Sciences of the United States of America · 2000
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

C S ShashikantDepartment of Molecular, Cellular, and Developmental Biology, P.O. Box 208103, New Haven, CT 06520, USA. shashi@minerva.cis.yale.edu
C B Kim
M A Borbély
W C Wang
F H Ruddle
Yale University · US

Funding

GENETIC ANALYSIS OF SOMATIC CELL POPULATIONR01GM009966 · NIGMS · YALE UNIVERSITY · PI RUDDLE, FRANK H · 1985 to 2006
$2.2M
GENETIC ANALYSIS OF SOMATIC CELL POPULATIONR37GM009966 · NIGMS · YALE UNIVERSITY · PI RUDDLE, FRANK H · 1990 to 1994
–
NIGMS NIH HHS GM09966NIGMS NIH HHS R01 GM009966
6 · The paper itself

Abstract

Variations in regulatory regions of developmental control genes have been implicated in the divergence of axial morphologies. To find potentially significant changes in cis-regulatory regions, we compared nucleotide sequences and activities of mammalian Hoxc8 early enhancers. The nucleotide sequence of the early enhancer region is extremely conserved among mammalian clades, with five previously described cis-acting elements, A-E, being invariant. However, a 4-bp deletion within element C of the Hoxc8 early enhancer sequence is observed in baleen whales. When assayed in transgenic mouse embryos, a baleen whale enhancer (unlike other mammalian enhancers) directs expression of the reporter gene to more posterior regions of the neural tube but fails to direct expression to posterior mesoderm. We suggest that regulation of Hoxc8 in baleen whales differs from other mammalian species and may be associated with variation in axial morphology.

Indexed as

Enhancer Elements, GeneticEvolution, MolecularSequence DeletionAnimalsBase Sequencebeta-GalactosidaseEmbryonic and Fetal DevelopmentGene Expression Regulation, DevelopmentalHomeodomain ProteinsHumansMammalsMiceMice, Inbred C57BLMice, TransgenicMolecular Sequence DataPolymerase Chain Reactionbeta-GalactosidaseHomeodomain ProteinsSpHox8 protein, Strongylocentrotus purpuratus

Identifiers

PMID9860988
PMCPMC28062
OpenAlexW1965616005

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.