Evidence map›Paper›PMID 9852012›Full record

ArticleJournal of bacteriology1998

Physiological role for the GlnK protein of enteric bacteria: relief of NifL inhibition under nitrogen-limiting conditions.

L He, E Soupene, A Ninfa, S Kustu

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
6.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 100 citations in OpenAlex.

  1. Nitrogenase regulation inbioRxiv : the preprint server for biology · 2026
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  6. The pivotal twin histidines and aromatic triad of the Escherichia coli ammonium channel AmtB can be replaced.Proceedings of the National Academy of Sciences of the United States of America · 2011
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

L HeDepartment of Plant and Microbial Biology, University of California, Berkeley, California 94720-3102, USA.
E Soupene
A Ninfa
S Kustu
University of California, Berkeley · USUniversity of Michigan–Ann Arbor · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In Klebsiella pneumoniae, NifA-dependent transcription of nitrogen fixation (nif) genes is inhibited by a flavoprotein, NifL, in the presence of molecular oxygen and/or combined nitrogen. We recently demonstrated that the general nitrogen regulator NtrC is required to relieve NifL inhibition under nitrogen (N)-limiting conditions. We provide evidence that the sole basis for the NtrC requirement is its role as an activator of transcription for glnK, which encodes a PII-like allosteric effector. Relief of NifL inhibition is a unique physiological function for GlnK in that the structurally related GlnB protein of enteric bacteria-apparently a paralogue of GlnK-cannot substitute. Unexpectedly, although covalent modification of GlnK by uridylylation normally occurs under N-limiting conditions, several lines of evidence indicate that uridylylation is not required for relief of NifL inhibition. When GlnK was synthesized constitutively from non-NtrC-dependent promoters, it was able to relieve NifL inhibition in the absence of uridylyltransferase, the product of the glnD gene, and under N excess conditions. Moreover, an altered form of GlnK, GlnKY51N, which cannot be uridylylated due to the absence of the requisite tyrosine, was still able to relieve NifL inhibition.

Indexed as

Nitrogen FixationTrans-ActivatorsBacterial ProteinsCarrier ProteinsDNA-Binding ProteinsEscherichia coliEscherichia coli ProteinsNitrogenNucleotidyltransferasesPII Nitrogen Regulatory ProteinsTranscription FactorsUDPglucose-Hexose-1-Phosphate UridylyltransferaseUridine KinaseBacterial ProteinsCarrier ProteinsDNA-Binding ProteinsEscherichia coli ProteinsglnG protein, E coliGlnK protein, Azorhizobium caulinodansglnK protein, E coliNifA protein, BacterianifL protein, BacteriaNitrogenNucleotidyltransferasesPIID regulatory protein, BacteriaPII Nitrogen Regulatory ProteinsTrans-ActivatorsTranscription FactorsUDPglucose-Hexose-1-Phosphate UridylyltransferaseUridine Kinase

Identifiers

PMID9852012
PMCPMC107771
OpenAlexW1547823054

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.