Evidence map›Paper›PMID 9852005›Full record

ArticleJournal of bacteriology1998

A MADS box protein consensus binding site is necessary and sufficient for activation of the opaque-phase-specific gene OP4 of Candida albicans.

S R Lockhart, M Nguyen, T Srikantha, D R Soll

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 28 citations in OpenAlex.

  1. White-opaque switching inMicrobiology and molecular biology reviews : MMBR · 2024
    Review
  2. mSphere · 2020
    Article
  3. Article
  4. Review
  5. Phenotypic Switching in Fungi.Current fungal infection reports · 2008
    Article
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  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

S R LockhartDepartment of Biological Sciences, University of Iowa, Iowa City, Iowa 52242, USA.
M Nguyen
T Srikantha
D R Soll
University of Iowa · US

Funding

SWITCHING AND CANDIDA PATHOGENESIS--A MOLECULAR ANALYSISR01AI039735 · NIAID · UNIVERSITY OF IOWA · PI SOLL, DAVID R. · 1996 to 2005
$1.5M
USE OF AN IN VIVO MODEL SYSTEM TO INVESTIGATE NIDDMZ01AG000214 · NIA · NATIONAL INSTITUTE ON AGING · PI EGAN, JOSEPHINE M · 1991 to 2008
$693k
INTERDISCIPLINARY RESEARCH TRAINING PROGRAM ON AGINGT32AG000214 · NIA · UNIVERSITY OF IOWA · PI WALLACE, ROBERT BRUCE · 1991 to 2000
$164k
ROLE OF ANTIOXIDANT ENZYMES IN ORAL CANCERP50DE010758 · NIDCR · UNIVERSITY OF IOWA · PI SWARTZENDRUBER, DONALD C · 1993 to 1998
–
Intramural NIH HHS Z01 AG000214NIAID NIH HHS AI39735NIAID NIH HHS R01 AI039735NIA NIH HHS T32 AG000214NIDCR NIH HHS DE10758
6 · The paper itself

Abstract

The majority of strains of Candida albicans can switch frequently and reversibly between two or more general phenotypes, a process now considered a putative virulence factor in this species. Candida albicans WO-1 switches frequently and reversibly between a white and an opaque phase, and this phenotypic transition is accompanied by the differential expression of white-phase-specific and opaque-phase-specific genes. In the opaque phase, cells differentially express the gene OP4, which encodes a putative protein 402 amino acids in length that contains a highly hydrophobic amino-terminal sequence and a carboxy-terminal sequence with a pI of 10.73. A series of deletion constructs fused to the Renilla reniformis luciferase was used to functionally characterize the OP4 promoter in order to investigate how this gene is differentially expressed in the white-opaque transition. An extremely strong 17-bp transcription activation sequence was identified between -422 and -404 bp. This sequence contained a MADS box consensus binding site, most closely related to the Mcm1 binding site of Saccharomyces cerevisiae. A number of point mutations generated in the MADS box consensus binding site as well as a complete deletion of the consensus site further demonstrated that it was essential for the activation of OP4 transcription in the opaque phase. Gel mobility shift assays with the 17-bp activation sequence identified three specific complexes which formed with both white- and opaque-phase cell extracts. Competition with a putative MADS box consensus binding site from the promoter of the coordinately regulated opaque-phase-specific gene PEP1 (SAP1) and the human MADS box consensus binding site for serum response factor demonstrated that one of the three complexes formed was specific to the OP4 sequence.

Indexed as

Consensus SequenceGene Expression Regulation, FungalGenes, FungalTranscriptional ActivationBase SequenceBinding SitesCandida albicansDNA-Binding ProteinsFungal ProteinsHumansMinichromosome Maintenance 1 ProteinMolecular Sequence DataMutagenesisPromoter Regions, GeneticTranscription FactorsTranscription, GeneticDNA-Binding ProteinsFungal ProteinsMinichromosome Maintenance 1 ProteinTranscription Factors

Identifiers

PMID9852005
PMCPMC107764
OpenAlexW1692610893

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.