Evidence map›Paper›PMID 9851988›Full record

ArticleJournal of bacteriology1998

The arcABDC gene cluster, encoding the arginine deiminase pathway of Bacillus licheniformis, and its activation by the arginine repressor argR.

A Maghnouj, T F de Sousa Cabral, V Stalon, C Vander Wauven

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
4.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 118 citations in OpenAlex.

  1. Article
  2. Article
  3. Genomic and Transcriptomic Profiling ofFoods (Basel, Switzerland) · 2025
    Article
  4. Article
  5. Review
  6. The ArgR-Regulated ADI Pathway Facilitates the Survival ofInternational journal of molecular sciences · 2024
    Article
  7. Description ofFrontiers in microbiology · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Frontiers in microbiology · 2017
    Article
  15. Article
  16. Article
  17. Review
  18. Arginine Metabolism in Bacterial Pathogenesis and Cancer Therapy.International journal of molecular sciences · 2016
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

A MaghnoujLaboratoire de Microbiologie de l'Université Libre de Bruxelles, B-1070 Brussels, Belgium.
T F de Sousa Cabral
V Stalon
C Vander Wauven
Université Libre de Bruxelles · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The arginine deiminase pathway enables Bacillus licheniformis to grow anaerobically on arginine. Both the presence of arginine and anaerobiosis are needed to trigger induction of the pathway. In this study we have cloned and sequenced the arc genes encoding the pathway. They appear clustered in an operon-like structure in the order arcA (arginine deiminase), arcB (ornithine carbamoyltransferase), arcD (putative arginine-ornithine antiporter), arcC (carbamate kinase). It was found that B. licheniformis has an arginine repressor, ArgR, homologous to the B. subtilis arginine repressor AhrC. Mutants affected in argR were isolated. These mutants have lost both repression by arginine of the anabolic ornithine carbamoyltransferase and induction of the arginine deiminase pathway. Electrophoretic band shift experiments and DNase I footprinting revealed that in the presence of arginine, ArgR binds to a site upstream from the arc promoter. The binding site is centered 108 nucleotides upstream from the transcription start point and contains a single Arg box.

Indexed as

Amino Acid Transport SystemsMultigene FamilyAmino Acid SequenceAntiportersBacillusBacterial Outer Membrane ProteinsBacterial ProteinsBase SequenceCloning, MolecularDNA, BacterialEnzyme InductionEscherichia coli ProteinsGene Expression Regulation, BacterialGene Expression Regulation, EnzymologicHydrolasesMolecular Sequence DataAmino Acid Transport SystemsAntiportersarcA protein, E coliArcD protein, Bacteriaarginine deiminaseArgR protein, BacteriaBacterial Outer Membrane ProteinsBacterial Proteinscarbamate kinaseDNA, BacterialEscherichia coli ProteinsHydrolasesOrnithine CarbamoyltransferasePhosphotransferases (Carboxyl Group Acceptor)Repressor Proteins

Identifiers

PMID9851988
PMCPMC107747
OpenAlexW1937790690

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.