Evidence map›Paper›PMID 9843981›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America1998

Cluster analysis and display of genome-wide expression patterns.

M B Eisen, P T Spellman, P O Brown, D Botstein

Registry-linked trialAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT01101854 (Gene Expression Profiles in Healing and Non-Healing Wounds), which is not on this map. Cited by 5,929 papers.

0numbers the graph read from it
0cells of the map it votes in
5,929citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT01101854 terminatednot on this mapstarted 2020, after this paper: background citation

Gene Expression Profiles in Healing and Non-Healing Wounds

TypeobservationalSponsorIndiana UniversityRan2020 to 2021Enrolled74ConditionsWounds and Injuries
3 · Its place in the literature

Who cites it

5,929 citing papers in PubMed.

  1. Article
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  4. Article
  5. Review
  6. A Gene-Program Architecture of Mouse T cells.bioRxiv : the preprint server for biology · 2026
    Article
  7. Review
  8. Review
  9. Article
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  11. Article
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  13. Review
  14. Article
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  17. Triclustering Model for Three-Dimensional Time-Series Gene Expression Data.International journal of molecular sciences · 2026
    Article
  18. Article
  19. Article
  20. Article

5,869 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

M B EisenDepartment of Genetics, Stanford University School of Medicine, 300 Pasteur Avenue, Stanford, CA 94305, USA.
P T Spellman
P O Brown
D Botstein

Funding

Genetics of Functional Interactions in YeastR01GM046406 · NIGMS · STANFORD UNIVERSITY · PI BOTSTEIN, DAVID · 2001 to 2015
$9.5M
GENE EXPRESSION IN CANCER BY MICROARRAY HYBRIDIZATIONR01CA077097 · NCI · STANFORD UNIVERSITY · PI BROWN, PATRICK O. · 1997 to 2010
$8.7M
FUNCTIONAL MAP OF THE YEAST GENOMER01HG000983 · NHGRI · STANFORD UNIVERSITY · PI BROWN, PATRICK O. · 1996 to 2001
$1.0M
GENETICS OF FUNCTIONAL INTERACTIONS IN YEASTR37GM046406 · NIGMS · STANFORD UNIVERSITY · PI BOTSTEIN, DAVID · 1991 to 2000
$683k
HUMAN METABOLISM OF DEUTERATED CAROTEOIDSR01CA046406 · NCI · IOWA STATE UNIVERSITY · PI OLSON, JAMES A · 1991 to 1993
–
HUMAN METABOLISM OF DEUTERATED CAROTENOIDSU01CA046406 · NCI · IOWA STATE UNIVERSITY · PI OLSON, JAMES A · 1987 to 1989
–
NCI NIH HHS CA46406NCI NIH HHS CA77097NCI NIH HHS R01 CA077097NHGRI NIH HHS HG00983NIGMS NIH HHS R01 GM046406NIGMS NIH HHS R37 GM046406
6 · The paper itself

Abstract

A system of cluster analysis for genome-wide expression data from DNA microarray hybridization is described that uses standard statistical algorithms to arrange genes according to similarity in pattern of gene expression. The output is displayed graphically, conveying the clustering and the underlying expression data simultaneously in a form intuitive for biologists. We have found in the budding yeast Saccharomyces cerevisiae that clustering gene expression data groups together efficiently genes of known similar function, and we find a similar tendency in human data. Thus patterns seen in genome-wide expression experiments can be interpreted as indications of the status of cellular processes. Also, coexpression of genes of known function with poorly characterized or novel genes may provide a simple means of gaining leads to the functions of many genes for which information is not available currently.

Indexed as

Genome, FungalGenome, HumanMultigene FamilyCluster AnalysisGene ExpressionHumansSaccharomyces cerevisiae

Identifiers

PMID9843981
PMCPMC24541

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.