Evidence map›Paper›PMID 9832545›Full record

ArticleThe Journal of cell biology1998

Processing of the psbA 5' untranslated region in Chlamydomonas reinhardtii depends upon factors mediating ribosome association.

R K Bruick, S P Mayfield

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
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  6. Article
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  8. Article
  9. Chloroplast RNA processing and stability.Photosynthesis research · 2004
    Article
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  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

R K BruickDepartment of Cell Biology and The Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, California 92037, USA.
S P Mayfield
Scripps Research Institute · US

Funding

PROTEIN/RNA INTERACTIONS IN TRANSLATIONAL REGULATIONR01GM054659 · NIGMS · SCRIPPS RESEARCH INSTITUTE · PI MAYFIELD, STEPHEN P · 1997 to 2005
$1.7M
NIGMS NIH HHS GM54659NIGMS NIH HHS R01 GM054659
6 · The paper itself

Abstract

The 5' untranslated region of the chloroplast psbA mRNA, encoding the D1 protein, is processed in Chlamydomonas reinhardtii. Processing occurs just upstream of a consensus Shine-Dalgarno sequence and results in the removal of 54 nucleotides from the 5' terminus, including a stem-loop element identified previously as an important structure for D1 expression. Examination of this processing event in C. reinhardtii strains containing mutations within the chloroplast or nuclear genomes that block psbA translation reveals a correlation between processing and ribosome association. Mutations within the 5' untranslated region of the psbA mRNA that disrupt the Shine-Dalgarno sequence, acting as a ribosome binding site, preclude translation and prevent mRNA processing. Similarly, nuclear mutations that specifically affect synthesis of the D1 protein specifically affect processing of the psbA mRNA. In vitro, loss of the stem-loop element does not prohibit the binding of a message-specific protein complex required for translational activation of psbA upon illumination. These results are consistent with a hierarchical maturation pathway for chloroplast messages, mediated by nuclear-encoded factors, that integrates mRNA processing, message stability, ribosome association, and translation.

Indexed as

5' Untranslated RegionsAnimalsBase SequenceBinding SitesCell NucleusChlamydomonas reinhardtiiChloroplastsDNA PrimersLightMolecular Sequence DataMutationNucleic Acid ConformationPhotosynthetic Reaction Center Complex ProteinsPhotosystem II Protein ComplexRibosomesRNA, Messenger5' Untranslated RegionsDNA PrimersPhotosynthetic Reaction Center Complex ProteinsPhotosystem II Protein ComplexRNA, MessengerRNA, PlantRNA, Protozoan

Identifiers

PMID9832545
PMCPMC2133069
OpenAlexW2030297075

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.