Evidence map›Paper›PMID 9832504›Full record

ArticleGenes & development1998

The interaction between HIV-1 Tat and human cyclin T1 requires zinc and a critical cysteine residue that is not conserved in the murine CycT1 protein.

M E Garber, P Wei, V N KewalRamani, T P Mayall, C H Herrmann, A P Rice, D R Littman, K A Jones

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 220 papers.

0numbers the graph read from it
0cells of the map it votes in
220citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

220 citing papers in PubMed, 428 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Childhood HIV-associated nephropathy: 36 years later.Pediatric nephrology (Berlin, Germany) · 2021
    Review
  17. Review
  18. Article
  19. Article
  20. Review

160 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

M E GarberRegulatory Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, California 92037-1099, USA.
P Wei
V N KewalRamani
T P Mayall
C H Herrmann
A P Rice
D R Littman
K A Jones
Salk Institute for Biological Studies · USColumbia University Irving Medical Center · USHoward Hughes Medical Institute · USNew York University · USUniversity of California, San Diego · US

Funding

MURINE MODEL SYSTEM FOR HIV PATHOGENESISR01AI033856 · NIAID · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI LITTMAN, DAN · 1993 to 2008
$4.2M
Mechanisms of HIV-1 latency in CD4+ T lymphocytesR01AI035381 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI RICE, ANDREW P · 1995 to 2007
$2.5M
Mechanism of HIV-1 Tat FunctionR56AI035381 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI RICE, ANDREW P · 2009 to 2009
$384k
TAT AND TAR-BINDING PROTEINSR01AI033824 · NIAID · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI JONES, KATHERINE A · 1993 to 1997
–
NIAID NIH HHS AI33824NIAID NIH HHS AI33856NIAID NIH HHS AI35381NIAID NIH HHS R01 AI033856NIAID NIH HHS R01 AI035381NIAID NIH HHS R56 AI035381
6 · The paper itself

Abstract

HIV-1 Tat activates transcription through binding to human cyclin T1, a regulatory subunit of the TAK/P-TEFb CTD kinase complex. Here we show that the cyclin domain of hCycT1 is necessary and sufficient to interact with Tat and promote cooperative binding to TAR RNA in vitro, as well as mediate Tat transactivation in vivo. A Tat:TAR recognition motif (TRM) was identified at the carboxy-terminal edge of the cyclin domain, and we show that hCycT1 can interact simultaneously with Tat and CDK9 on TAR RNA in vitro. Alanine-scanning mutagenesis of the hCycT1 TRM identified residues that are critical for the interaction with Tat and others that are required specifically for binding of the complex to TAR RNA. Interestingly, we find that the interaction between Tat and hCycT1 requires zinc as well as essential cysteine residues in both proteins. Cloning and characterization of the murine CycT1 protein revealed that it lacks a critical cysteine residue (C261) and forms a weak, zinc-independent complex with HIV-1 Tat that greatly reduces binding to TAR RNA. A point mutation in mCycT1 (Y261C) restores high-affinity, zinc-dependent binding to Tat and TAR in vitro, and rescues Tat transactivation in vivo. Although overexpression of hCycT1 in NIH3T3 cells strongly enhances transcription from an integrated proviral promoter, we find that this fails to overcome all blocks to productive HIV-1 infection in murine cells.

Indexed as

Amino Acid SequenceAnimalsBinding SitesCloning, MolecularConserved SequenceCyclin-Dependent KinasesCyclinsCyclin TCysteineGene Expression RegulationGene Products, tatHIV-1HIV Long Terminal RepeatHumansMiceMolecular Sequence DataCCNT1 protein, humanCcnt1 protein, mouseCyclin-Dependent KinasesCyclinsCyclin TCysteineGene Products, tatRNA-Binding ProteinsRNA, Viraltat Gene Products, Human Immunodeficiency VirusViral ProteinsZinc

Identifiers

PMID9832504
PMCPMC317238
OpenAlexW2135736528

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.