Evidence map›Paper›PMID 9811353›Full record

ArticleThe American journal of pathology1998

Immunoglobulin VH gene mutational analysis suggests that primary effusion lymphomas derive from different stages of B cell maturation.

A Matolcsy, R G Nádor, E Cesarman, D M Knowles

Open access · greenAbstract read
In one paragraph

Article in The American journal of pathology, 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 161 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Review
  6. Review
  7. How Kaposi's sarcoma-associated herpesvirus stably transforms peripheral B cells towards lymphomagenesis.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  8. Human herpesvirus-encoded kinase induces B cell lymphomas in vivo.The Journal of clinical investigation · 2018
    Article
  9. Article
  10. Article
  11. Article
  12. The clinicopathologic spectrum of mature aggressive B cell lymphomas.Virchows Archiv : an international journal of pathology · 2017
    Review
  13. Review
  14. Review
  15. Article
  16. Article
  17. Epstein-Barr Virus-associated lymphoproliferative disorders: experimental and clinical developments.International journal of clinical and experimental medicine · 2015
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

A MatolcsyDepartment of Pathology, University Medical School of Pécs, Hungary.
R G Nádor
E Cesarman
D M Knowles
Cornell University · USUniversity of Pecs · HU

Funding

Survival Signals in AIDS LymphomasR01CA068939 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI CESARMAN, ETHEL · 2001 to 2010
$2.6M
KSHV PUTATIVE ONCOGENES IN AIDS MALIGNANCIESR01CA073531 · NCI · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI CESARMAN, ETHEL · 1996 to 1999
–
KAPOSIS SARCOMA ASSOCIATED VIRUS IN AIDS/LYMPHOMASR29CA068939 · NCI · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI CESARMAN, ETHEL · 1995 to 1999
–
NCI NIH HHS CA 68939NCI NIH HHS CA 73531NCI NIH HHS R01 CA068939NCI NIH HHS R29 CA068939
6 · The paper itself

Abstract

Primary effusion lymphoma (PEL) is a recently described distinct subtype of non-Hodgkin's lymphoma associated with infection by the Kaposi's sarcoma-associated herpesvirus, also called human herpesvirus-8. Most cases of PEL are also associated with the Epstein-Barr virus (EBV). In order to better characterize the cellular origin of PEL, we investigated the immunoglobulin (Ig) heavy chain variable region (VH,) genes expressed by tumor cells of the BC-1 and BC-3 cell lines derived from PELs and five original PEL specimens. In the six EBV-positive PELs examined, including the BC-1 cell line, the expressed VH gene sequences showed numerous point mutations relative to the putative germline VH gene sequences. In addition, the VH, segment of one of these cases showed intraclonal sequence heterogeneity, indicating ongoing somatic mutation. In five cases, the distribution and type of mutations indicated that tumor cells had been selected by antigen. Because somatically mutated Ig genes are expressed by B cells that have reached a germinal center/post-germinal center stage of development, these findings suggest that the PEL cell of origin is a germinal center or post-germinal center B cell in most cases. In contrast, the VH gene segment expressed by tumor cells of the BC-3 cell line, which was originated from an EBV-negative PEL obtained from an HIV-negative patient, was unmutated, suggesting a pre-germinal center B cell origin for tumor cells of this particular PEL cell line. Taken together, these findings suggest that development of PELs may not be restricted to one stage of B cell differentiation and may represent transformation of B cells at different stages of ontogeny.

Indexed as

Amino Acid SequenceBase SequenceCell DifferentiationDNA Mutational AnalysisGene LibraryGenes, ImmunoglobulinHumansImmunoglobulin Heavy ChainsImmunoglobulin Variable RegionImmunophenotypingLymphoma, B-CellMolecular Sequence DataPleural Effusion, MalignantSequence AlignmentSequence Analysis, DNATumor Cells, CulturedImmunoglobulin Heavy ChainsImmunoglobulin Variable Region

Identifiers

PMID9811353
PMCPMC1853415
OpenAlexW1991782104

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.