Evidence map›Paper›PMID 9792099›Full record

ArticleProtein science : a publication of the Protein Society1998

Effects of proline cis-trans isomerization on TB domain secondary structure.

X Yuan, J M Werner, V Knott, P A Handford, I D Campbell, K Downing

Open access · greenAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Functional aspects of protein flexibility.Cellular and molecular life sciences : CMLS · 2009
    Review
  3. Article
  4. Solution structure of a functionally active fragment of decay-accelerating factor.Proceedings of the National Academy of Sciences of the United States of America · 2003
    Article
  5. Fibrillin: from microfibril assembly to biomechanical function.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2002
    Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

X YuanDepartment of Biochemistry, University of Oxford, United Kingdom.
J M Werner
V Knott
P A Handford
I D Campbell
K Downing
University of Oxford · GB

Funding

Wellcome Trust
6 · The paper itself

Abstract

The transforming growth factor beta (TGF-beta) binding protein-like (TB) domain is found principally in proteins localized to extracellular matrix fibrils, including human fibrillin-1, the defective protein in the Marfan syndrome. Analysis of the nuclear magnetic resonance (NMR) data for the sixth TB module from human fibrillin-1 has revealed the existence of two stable conformers that differ in the isomerization states of two proline residues. Unusually, the two isoforms do not readily interconvert and are stable on the time scale of milliseconds. We have computed independent structures of the major and minor conformers of TB6 to assess how the domain fold adjusts to incorporate alternatively cis- or trans-prolines. Based on previous observations, it has been suggested that multiple conformers can only be accommodated in flexible regions of protein structure. In contrast, P22, which exists in trans in the major form and cis in the minor form of TB6, is in a rigid region of the domain, which is confirmed by backbone dynamics measurements. Overall, the structures of the major and minor conformers are similar. However, the secondary structure topologies of the two forms differ as a direct consequence of the changes in proline conformation.

Indexed as

IsomerismProtein Structure, SecondaryAdipokinesFibrillin-1FibrillinsHumansMagnetic Resonance SpectroscopyMarfan SyndromeMicrofilament ProteinsModels, MolecularProlineProtein ConformationTransforming Growth Factor betaAdipokinesFBN1 protein, humanFibrillin-1FibrillinsMicrofilament ProteinsProlineTransforming Growth Factor beta

Identifiers

PMID9792099
PMCPMC2143832
OpenAlexW2059464099

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.