Evidence map›Paper›PMID 9724651›Full record

ArticleThe EMBO journal1998

Chromatin immunoselection defines a TAL-1 target gene.

S Cohen-Kaminsky, L Maouche-Chrétien, L Vitelli, M A Vinit, I Blanchard, M Yamamoto, C Peschle, P H Roméo

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.0field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 55 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Networking erythropoiesis.The Journal of experimental medicine · 2010
    Review
  6. Article
  7. Article
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  11. Article
  12. Article
  13. Article
  14. A major role for the TATA box in recruitment of chromatin modifying complexes to a globin gene promoter.Proceedings of the National Academy of Sciences of the United States of America · 2003
    Article
  15. Gradient of E2A activity in B-cell development.Molecular and cellular biology · 2002
    Article
  16. Article
  17. Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

S Cohen-KaminskyINSERM, U474, Hématologie Moléculaire, Hôpital Henri Mondor, 51 avenue du Maréchal de Lattre de Tassigny, 94010 Créteil, France.
L Maouche-Chrétien
L Vitelli
M A Vinit
I Blanchard
M Yamamoto
C Peschle
P H Roméo
Centre Hospitalier Universitaire Henri-Mondor · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Despite the major functions of the basic helix-loop-helix transcription factor TAL-1 in hematopoiesis and T-cell leukemogenesis, no TAL-1 target gene has been identified. Using immunoprecipitation of genomic fragments bound to TAL-1 in the chromatin of murine erythro-leukemia (MEL) cells, we found that 10% of the immunoselected fragments contained a CAGATG or a CAGGTG E-box, followed by a GATA site. We studied one of these fragments containing two E-boxes, CAGATG and CAGGTC, followed by a GATA motif, and showed that TAL-1 binds to the CAGGTG E-box with an affinity modulated by the CAGATG or the GATA site, and that the CAGGTG-GATA motif exhibits positive transcriptional activity in MEL but not in HeLa cells. This immunoselected sequence is located within an intron of a new gene co-expressed with TAL-1 in endothelial and erythroid cells, but not expressed in fibroblasts or adult liver where no TAL-1 mRNA was detected. Finally, in vitro differentiation of embryonic stem cells towards the erythro/megakaryocytic pathways showed that the TAL-1 target gene expression followed TAL-1 and GATA-1 expression. These results establish that TAL-1 is likely to activate its target genes through a complex that binds an E-box-GATA motif and define the first gene regulated by TAL-1.

Indexed as

Gene Expression RegulationProto-Oncogene ProteinsAmino Acid SequenceAnimalsBase SequenceBasic Helix-Loop-Helix ProteinsBinding SitesCell DifferentiationChromatinDNA-Binding ProteinsErythroid-Specific DNA-Binding FactorsGATA1 Transcription FactorGene Expression Regulation, NeoplasticHeLa CellsHelix-Loop-Helix MotifsHematopoiesisBasic Helix-Loop-Helix ProteinsChromatinDNA-Binding ProteinsErythroid-Specific DNA-Binding FactorsGATA1 protein, humanGata1 protein, mouseGATA1 Transcription FactorProto-Oncogene ProteinsTAL1 protein, humanTal1 protein, mouseT-Cell Acute Lymphocytic Leukemia Protein 1Transcription Factors

Identifiers

PMID9724651
PMCPMC1170843
OpenAlexW2148686400

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.