ArticleProceedings of the National Academy of Sciences of the United States of America1998
Analysis of xylem formation in pine by cDNA sequencing.
Article in Proceedings of the National Academy of Sciences of the United States of America, 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 83 papers.
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Who cites it
83 citing papers in PubMed.
- A Talk between Flavonoids and Hormones to Reorient the Growth of Gymnosperms.International journal of molecular sciences · 2021Review
- Localised laccase activity modulates distribution of lignin polymers in gymnosperm compression wood.The New phytologist · 2021Article
- Uclacyanin Proteins Are Required for Lignified Nanodomain Formation within Casparian Strips.Current biology : CB · 2020Article
- Induction of PrMADS10 on the lower side of bent pine tree stems: potential role in modifying plant cell wall properties and wood anatomy.Scientific reports · 2019Article
- PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.Plant biotechnology journal · 2018Article
- Primary Metabolism during Biosynthesis of Secondary Wall Polymers of Protoxylem Vessel Elements.Plant physiology · 2016Article
- Proteins involved in biophoton emission and flooding-stress responses in soybean under light and dark conditions.Molecular biology reports · 2016Article
- Modular organization of the white spruce (Picea glauca) transcriptome reveals functional organization and evolutionary signatures.The New phytologist · 2015Article
- YeATS - a tool suite for analyzing RNA-seq derived transcriptome identifies a highly transcribed putative extensin in heartwood/sapwood transition zone in black walnut.F1000Research · 2015Article
- NAC-MYB-based transcriptional regulation of secondary cell wall biosynthesis in land plants.Frontiers in plant science · 2015Review
- Molecular characterization of two A-type P450s, WsCYP98A and WsCYP76A from Withania somnifera (L.) Dunal: expression analysis and withanolide accumulation in response to exogenous elicitations.BMC biotechnology · 2014Article
- Transcriptome sequencing and profiling of expressed genes in cambial zone and differentiating xylem of Japanese cedar (Cryptomeria japonica).BMC genomics · 2014Article
- Unique features of the loblolly pine (Pinus taeda L.) megagenome revealed through sequence annotation.Genetics · 2014Article
- Biochemical and molecular changes associated with heteroxylan biosynthesis in Neolamarckia cadamba (Rubiaceae) during xylogenesis.Frontiers in plant science · 2014Article
- Generation, functional annotation and comparative analysis of black spruce (Picea mariana) ESTs: an important conifer genomic resource.BMC genomics · 2013Article
- Open access to tree genomes: the path to a better forest.Genome biology · 2013Article
- Transcriptome characterisation of Pinus tabuliformis and evolution of genes in the Pinus phylogeny.BMC genomics · 2013Article
- The transcriptomics of secondary growth and wood formation in conifers.Molecular biology international · 2013Review
- Transcriptome survey of Patagonian southern beech Nothofagus nervosa (= N. Alpina): assembly, annotation and molecular marker discovery.BMC genomics · 2012Article
- Reprogramming of gene expression during compression wood formation in pine: coordinated modulation of S-adenosylmethionine, lignin and lignan related genes.BMC plant biology · 2012Article
23 more citing papers are in PubMed but not listed here.
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11 authors.
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Abstract
Secondary xylem (wood) formation is likely to involve some genes expressed rarely or not at all in herbaceous plants. Moreover, environmental and developmental stimuli influence secondary xylem differentiation, producing morphological and chemical changes in wood. To increase our understanding of xylem formation, and to provide material for comparative analysis of gymnosperm and angiosperm sequences, ESTs were obtained from immature xylem of loblolly pine (Pinus taeda L.). A total of 1,097 single-pass sequences were obtained from 5' ends of cDNAs made from gravistimulated tissue from bent trees. Cluster analysis detected 107 groups of similar sequences, ranging in size from 2 to 20 sequences. A total of 361 sequences fell into these groups, whereas 736 sequences were unique. About 55% of the pine EST sequences show similarity to previously described sequences in public databases. About 10% of the recognized genes encode factors involved in cell wall formation. Sequences similar to cell wall proteins, most known lignin biosynthetic enzymes, and several enzymes of carbohydrate metabolism were found. A number of putative regulatory proteins also are represented. Expression patterns of several of these genes were studied in various tissues and organs of pine. Sequencing novel genes expressed during xylem formation will provide a powerful means of identifying mechanisms controlling this important differentiation pathway.
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