Evidence map›Paper›PMID 9679591›Full record

ArticleJournal of the American Society for Mass Spectrometry1998

Zinc-induced conformational changes in the DNA-binding domain of the vitamin D receptor determined by electrospray ionization mass spectrometry.

T D Veenstra, K L Johnson, A J Tomlinson, T A Craig, R Kumar, S Naylor

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of the American Society for Mass Spectrometry, 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 44 citations in OpenAlex.

  1. Zinc and its role in vitamin D function.Current research in physiology · 2022
    Review
  2. Article
  3. Article
  4. Expression and regulation of the vitamin D receptor in the zebrafish, Danio rerio.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2008
    Article
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  13. Copper binding to octarepeat peptides of the prion protein monitored by mass spectrometry.Protein science : a publication of the Protein Society · 2000
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

T D VeenstraDepartment of Nephrology Research Unit, Mayo Clinic Foundation, Rochester, Minnesota, USA.
K L Johnson
A J Tomlinson
T A Craig
R Kumar
S Naylor
Mayo Clinic · US

Funding

THE PHYSIOLOGY AND METABOLISM OF VITAMIN DR01DK025409 · NIDDK · MAYO CLINIC COLL OF MEDICINE, ROCHESTER · PI KUMAR, RAJIV · 1986 to 2003
$1.0M
NIDDK NIH HHS DK25409NIDDK NIH HHS R01 DK025409
6 · The paper itself

Abstract

Electrospray ionization mass spectrometry (ESI-MS) was used to measure conformational changes within the DNA-binding domain of the vitamin D receptor (VDR DBD) upon binding zinc (Zn2+). As increasing concentrations of Zn2+ were added to the VDR DBD, a gradual shift in the mass envelope to lower charge states was observed in the multiply charged spectrum. The shift in the charge states was correlated to changes observed in the far-ultraviolet circular dichroic (far-UV CD) spectrum of the protein as it was titrated with Zn2+. Both the multiply charged ESI and far-UV CD spectra of the Zn(2+)-titrated protein show that the binding of the first Zn2+ ion to the protein results in very little conformational change in the protein. The binding of a second Zn2+ ion resulted in a significant alteration in the structure of the protein as indicated by changes in both the multiply charged ESI and far-UV CD spectra. Much smaller changes were seen within the multiply charged ESI or far-UV CD spectra upon increasing the Zn2+ concentration beyond 2 mol/mol of protein. The results presented indicate that ESI-MS in combination with CD is a powerful method to measure gross conformational changes induced by the binding of metals to metalloproteins.

Indexed as

Circular DichroismDNA-Binding ProteinsElectrochemistryMass SpectrometryProtein ConformationReceptors, CalcitriolSpectrophotometry, UltravioletZincDNA-Binding ProteinsReceptors, CalcitriolZinc

Identifiers

PMID9679591
OpenAlexW2034401382

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.