Evidence map›Paper›PMID 9671455›Full record

ArticleMolecular and cellular biology1998

Interplay of positive and negative regulators in transcription initiation by RNA polymerase II holoenzyme.

T I Lee, J J Wyrick, S S Koh, E G Jennings, E L Gadbois, R A Young

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 103 citations in OpenAlex.

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  18. Global distribution of negative cofactor 2 subunit-alpha on human promoters.Proceedings of the National Academy of Sciences of the United States of America · 2007
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

T I LeeWhitehead Institute for Biomedical Research, Cambridge, Massachusetts 02142, and Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.
J J Wyrick
S S Koh
E G Jennings
E L Gadbois
R A Young
Massachusetts Institute of Technology · USWhitehead Institute for Biomedical Research · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Activation of protein-encoding genes involves recruitment of an RNA polymerase II holoenzyme to promoters. Since the Srb4 subunit of the holoenzyme is essential for expression of most class II genes and is a target of at least one transcriptional activator, we reasoned that suppressors of a temperature-sensitive mutation in Srb4 would identify other factors generally involved in regulation of gene expression. We report here that MED6 and SRB6, both of which encode essential components of the holoenzyme, are among the dominant suppressors and that the products of these genes interact physically with Srb4. The recessive suppressors include NCB1 (BUR6), NCB2, NOT1, NOT3, NOT5, and CAF1, which encode subunits of NC2 and the Not complex. NC2 and Not proteins are general negative regulators which interact with TATA box binding protein (TBP). Taken together, these results suggest that transcription initiation involves a dynamic balance between activation mediated by specific components of the holoenzyme and repression by multiple TBP-associated regulators.

Indexed as

Gene Expression Regulation, FungalRibonucleasesSaccharomyces cerevisiae ProteinsAllelesAmino Acid SequenceAnimalsCell Cycle ProteinsCoenzymesDNA-Binding ProteinsFungal ProteinsMediator ComplexMolecular Sequence DataRabbitsRNA Polymerase IISaccharomyces cerevisiaeTATA-Box Binding ProteinCDC39 protein, S cerevisiaeCell Cycle ProteinsCoenzymesDNA-Binding ProteinsFungal ProteinsMED6 protein, S cerevisiaeMediator ComplexNOT5 protein, S cerevisiaePOP2 protein, S cerevisiaeRibonucleasesRNA Polymerase IISaccharomyces cerevisiae ProteinsSRB4 protein, S cerevisiaeSRB6 protein, S cerevisiaeTATA-Box Binding ProteinTrans-ActivatorsTranscription Factors

Identifiers

PMID9671455
PMCPMC109031
OpenAlexW2119928648

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.