Evidence map›Paper›PMID 9665999›Full record

ArticleJournal of clinical microbiology1998

A novel toxinotyping scheme and correlation of toxinotypes with serogroups of Clostridium difficile isolates.

M Rupnik, V Avesani, M Janc, C von Eichel-Streiber, M Delmée

Open access · bronzeAbstract read
In one paragraph

Article in Journal of clinical microbiology, 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 123 papers.

0numbers the graph read from it
0cells of the map it votes in
123citing papers in PubMed
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

123 citing papers in PubMed, 324 citations in OpenAlex.

  1. Trial
  2. Bacterial probiotics as an aid in the control of Clostridium difficile disease in neonatal pigs.The Canadian veterinary journal = La revue veterinaire canadienne · 2016
    Trial
  3. Article
  4. Diagnosis ofJournal of medical microbiology · 2024
    Review
  5. Ribotypes and New Virulent Strains Across Europe.Advances in experimental medicine and biology · 2024
    Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Prevalence, Molecular Characterization and Antimicrobial Susceptibility ofInternational journal of environmental research and public health · 2021
    Article
  11. Article
  12. Isolation and characterization of a multidrug-resistantJournal of environmental health science & engineering · 2020
    Article
  13. Comparative genomics ofMicrobial genomics · 2020
    Article
  14. Review
  15. Ribotype Classification ofFrontiers in microbiology · 2020
    Article
  16. Microorganisms · 2019
    Review
  17. Virulence of new variant strains ofNew microbes and new infections · 2019
    Article
  18. Pathogenicity locus determinants and toxinotyping ofNew microbes and new infections · 2018
    Article
  19. Gastroenterology report · 2018
    Review
  20. Toxin-positiveGut · 2018
    Article

63 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

M RupnikMicrobiology Unit, Catholic University of Louvain, Brussels, Belgium.
V Avesani
M Janc
C von Eichel-Streiber
M Delmée
UCLouvain · BEUniversity of Ljubljana · SI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Two hundred nineteen Clostridium difficile isolates from 22 serogroups were screened for changes in the genes coding for toxin B (tcdB) and toxin A (tcdA). Parts of the toxin genes were amplified, and the PCR fragments were checked for length polymorphisms and cut with several restriction enzymes to monitor restriction fragment length polymorphisms (RFLPs). For 47 strains (21%), differences in the toxin genes were found compared to the toxin genes of reference strain VPI 10,463. Polymorphisms were usually observed in both toxin genes. RFLPs were more commonly found in the tcdB gene, in which a single restriction enzyme could give up to five different patterns. Restriction sites seemed to be less heterogeneous in the tcdA gene, in which for most enzymes only two different RFLPs were recognized. However, deletions were observed in tcdA, and four new types of shortened tcdA genes are described. According to the changes in their toxin genes, variant strains could be divided into 10 groups (toxinotypes I to X). A toxinotype was characterized by similar patterns of changes in the toxin genes and in other regions of the pathogenicity locus and also similar pulsed-field gel electrophoresis patterns. Variant toxinotypes were found in 9 of the 22 serogroups studied, and some toxinotypes were clearly associated with specific serogroups. Toxinotype VIII is characteristic for all strains of serogroup F. Other serogroups in which variant toxinotypes were commonly found are A1, A15, E, and X. Testing of variability in C. difficile toxin genes not only might be useful as a molecular typing system but also could have implications in diagnostics and pathogenesis.

Indexed as

Bacterial ProteinsBacterial Typing TechniquesSerotypingBacterial ToxinsClostridioides difficileDNA, BacterialElectrophoresis, Gel, Pulsed-FieldEnterotoxinsGenetic VariationHumansPolymerase Chain ReactionPolymorphism, Restriction Fragment LengthVirulenceBacterial ProteinsBacterial ToxinsDNA, BacterialEnterotoxinstcdA protein, Clostridium difficiletoxB protein, Clostridium difficile

Identifiers

PMID9665999
PMCPMC105025
OpenAlexW2115419460

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.