Evidence map›Paper›PMID 9658150›Full record

ArticleJournal of virology1998

Maintenance of an intact human immunodeficiency virus type 1 vpr gene following mother-to-infant transmission.

V R Yedavalli, C Chappey, N Ahmad

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
  2. Review
  3. The HIV-1 Vpr Protein: A Multifaceted Target for Therapeutic Intervention.International journal of molecular sciences · 2017
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

V R YedavalliDepartment of Microbiology and Immunology, College of Medicine, The University of Arizona Health Sciences Center, Tucson, Arizona 85724, USA.
C Chappey
N Ahmad
University of Arizona · USNational Institutes of Health · US

Funding

Molecular Mechanisms of HIV-1 Pathogenesis in InfantsR21AI040378 · NIAID · UNIVERSITY OF ARIZONA · PI AHMAD, NAFEES · 2002 to 2002
$265k
MOLECULAR MECHANISMS OF HIV1 MOTHER-INFANT TRANSMISSIONR29AI040378 · NIAID · UNIVERSITY OF ARIZONA · PI AHMAD, NAFEES · 1997 to 2001
$212k
NIAID NIH HHS AI 40378NIAID NIH HHS R21 AI040378
6 · The paper itself

Abstract

The vpr sequences from six human immunodeficiency virus type 1 (HIV-1)-infected mother-infant pairs following perinatal transmission were analyzed. We found that 153 of the 166 clones analyzed from uncultured peripheral blood mononuclear cell DNA samples showed a 92.17% frequency of intact vpr open reading frames. There was a low degree of heterogeneity of vpr genes within mothers, within infants, and between epidemiologically linked mother-infant pairs. The distances between vpr sequences were greater in epidemiologically unlinked individuals than in epidemiologically linked mother-infant pairs. Moreover, the infants' sequences displayed patterns similar to those seen in their mothers. The functional domains essential for Vpr activity, including virion incorporation, nuclear import, and cell cycle arrest and differentiation were highly conserved in most of the sequences. Phylogenetic analyses of 166 mother-infant pairs and 195 other available vpr sequences from HIV databases formed distinct clusters for each mother-infant pair and for other vpr sequences and grouped the six mother-infant pairs' sequences with subtype B sequences. A high degree of conservation of intact and functional vpr supports the notion that vpr plays an important role in HIV-1 infection and replication in mother-infant isolates that are involved in perinatal transmission.

Indexed as

Infectious Disease Transmission, VerticalAmino Acid SequenceBase SequenceBinding SitesChild, PreschoolCloning, MolecularConserved SequenceDNA, ViralElectronic Data ProcessingFemaleGene Products, vprHIV-1HIV InfectionsHumansInfantInfant, NewbornDNA, ViralGene Products, vprvpr Gene Products, Human Immunodeficiency Virus

Identifiers

PMID9658150
PMCPMC109910
OpenAlexW2108287388

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.