Evidence map›Paper›PMID 9632712›Full record

ArticleThe Journal of biological chemistry1998

Nop5p is a small nucleolar ribonucleoprotein component required for pre-18 S rRNA processing in yeast.

P Wu, J S Brockenbrough, A C Metcalfe, S Chen, J P Aris

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
7.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 139 citations in OpenAlex.

  1. Article
  2. Box C/D guide RNAs recognize a maximum of 10 nt of substrates.Proceedings of the National Academy of Sciences of the United States of America · 2016
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9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

P WuDepartment of Anatomy and Cell Biology, Health Science Center, Box 100235, University of Florida, Gainesville, Florida 32610, USA.
J S Brockenbrough
A C Metcalfe
S Chen
J P Aris
University of Florida Health Science Center · US

Funding

NUCLEOLAR FUNCTION AND CELL GROWTH IN YEASTR01GM048586 · NIGMS · UNIVERSITY OF FLORIDA · PI ARIS, JOHN P · 1994 to 1998
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NIGMS NIH HHS GM48586NIGMS NIH HHS R01 GM048586
6 · The paper itself

Abstract

We have identified a novel nucleolar protein, Nop5p, that is essential for growth in Saccharomyces cerevisiae. Monoclonal antibodies B47 and 37C12 recognize Nop5p, which has a predicted size of 57 kDa and possesses a KKX repeat motif at its carboxyl terminus. Truncations that removed the KKX motif were functional and localized to the nucleolus, but conferred slow growth at 37 degreesC. Nop5p shows significant sequence homology with yeast Sik1p/Nop56p, and putative homologues in archaebacteria, plants, and human. Depletion of Nop5p in a GAL-NOP5 strain lengthened the doubling time about 5-fold, and selectively reduced steady-state levels of 40 S ribosomal subunits and 18 S rRNA relative to levels of free 60 S subunits and 25 S rRNA. Northern blotting and primer extension analyses showed that Nop5p depletion impairs processing of 35 S pre-rRNA at the A0 and A2 cleavage sites. Nop5p is associated with the small nucleolar RNAs U3, snR13, U14, and U18. Depletion of Nop5p caused the nucleolar protein Nop1p (yeast fibrillarin) to be localized to the nucleus and cytosol. Also, 37C12 co-immunoprecipitated Nop1p. These results suggest that Nop5p functions with Nop1p in the execution of early pre-rRNA processing steps that lead to formation of 18 S rRNA.

Indexed as

Ribonucleoproteins, Small NucleolarRNA Processing, Post-TranscriptionalSaccharomyces cerevisiae ProteinsAmino Acid SequenceAntibodies, MonoclonalEvolution, MolecularFungal ProteinsHumansMolecular Sequence DataNuclear ProteinsRibonucleoproteinsRibonucleoproteins, Small NuclearRNA PrecursorsRNA, Ribosomal, 18SSaccharomyces cerevisiaeAntibodies, MonoclonalFungal ProteinsNOP1 protein, S cerevisiaeNOP58 protein, S cerevisiaeNuclear ProteinsRibonucleoproteinsRibonucleoproteins, Small NuclearRibonucleoproteins, Small NucleolarRNA PrecursorsRNA, Ribosomal, 18SSaccharomyces cerevisiae Proteins

Identifiers

PMID9632712
PMCPMC3668566
OpenAlexW2067330753

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.