Evidence map›Paper›PMID 9628921›Full record

ArticleNucleic acids research1998

Influence of promoter potency on the transcriptional effects of YY1, SRF and Msx-1 in transient transfection analysis.

T Lee, M E Bradley, J L Walowitz

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

T LeeDepartment of Biochemistry, SUNY at Buffalo, 140 Farber Hall, 3435 Main Street, Buffalo, NY 14214-3000, USA. chunglee@acsu.buffalo.edu
M E Bradley
J L Walowitz
University at Buffalo, State University of New York · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Potent viral promoters/enhancers are often used to achieve high level expression of ectopic genes in transient transfection analysis. By using a GAL4-responsive transcription assay system, we show that the use of potent eukaryotic expression vectors can lead to biased transcriptional effects. Three functionally diverse transcription factors, YY1, SRF and Msx-1, were examined and each was found to exhibit a strong transrepression function in the context of the DNA binding domain of GAL4 when expressed from the cytomegalovirus (pCMV) or simian virus 40 (pSV) promoters/enhancers. An internal 15 amino acid domain of YY1 mediating transrepression in the viral promoter setting was identified. This GAL4-mediated transcriptional repression could, however, be completely relieved by using the yeast alcohol dehydrogenase promoter (pADH) to drive gene expression, which is approximately 100-fold weaker than canonical pCMV and pSV in cultured mammalian cells. In addition, low level expression achieved with the pADH vector unveiled the intrinsic transactivation functions of YY1 and SRF previously not observed with the GAL4 assay system. Our results highlight a potential pitfall in conventional pCMV- and pSV-based transfection assays and suggest that the use of a low level expression system may be preferable in most transcriptional analysis.

Indexed as

Promoter Regions, GeneticSaccharomyces cerevisiae ProteinsTranscription, GeneticAlcohol DehydrogenaseAnimalsBase SequenceCell LineDNA-Binding ProteinsDNA PrimersErythroid-Specific DNA-Binding FactorsGenetic VectorsHomeodomain ProteinsMiceMSX1 Transcription FactorNuclear ProteinsSerum Response FactorAlcohol DehydrogenaseDNA-Binding ProteinsDNA PrimersErythroid-Specific DNA-Binding FactorsGAL4 protein, S cerevisiaeHomeodomain ProteinsMSX1 Transcription FactorNuclear ProteinsSaccharomyces cerevisiae ProteinsSerum Response FactorTranscription FactorsYy1 protein, mouseYY1 Transcription Factor

Identifiers

PMID9628921
PMCPMC147687
OpenAlexW2061264066

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.