Evidence map›Paper›PMID 9618520›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America1998

Altered spectra of hypermutation in antibodies from mice deficient for the DNA mismatch repair protein PMS2.

D B Winter, Q H Phung, A Umar, S M Baker, R E Tarone, K Tanaka, R M Liskay, T A Kunkel, V A Bohr, P J Gearhart

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
10.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 105 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. AID and somatic hypermutation.Advances in immunology · 2010
    Review
  10. Immunoglobulin class switch recombination: study through human natural mutants.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2009
    Article
  11. Hijacked DNA repair proteins and unchained DNA polymerases.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2009
    Review
  12. Transcriptional pausing and stalling causes multiple clustered mutations by human activation-induced deaminase.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2009
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

D B WinterLaboratory of Molecular Genetics, National Institute on Aging, National Institutes of Health, 5600 Nathan Shock Drive, Baltimore, MD 21224, USA.
Q H Phung
A Umar
S M Baker
R E Tarone
K Tanaka
R M Liskay
T A Kunkel
V A Bohr
P J Gearhart
National Institutes of Health · US

Funding

INTRACHROMOSOMAL RECOMBINATION IN MAMMALIAN CELLSR37GM032741 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI LISKAY, ROBERT MICHAEL · 2000 to 2009
$3.4M
HOMOLOGOUS RECOMBINATION IN MAMMALIAN CELLSR01GM045413 · NIGMS · YALE UNIVERSITY · PI LISKAY, ROBERT MICHAEL · 1991 to 2006
$2.0M
INTRACHROMOSOMAL RECOMBINATION IN MAMMALIAN CELLSR01GM032741 · NIGMS · YALE UNIVERSITY · PI LISKAY, ROBERT MICHAEL · 1985 to 2013
$1.6M
NIGMS NIH HHS GM32741NIGMS NIH HHS GM45413NIGMS NIH HHS R01 GM032741NIGMS NIH HHS R01 GM045413NIGMS NIH HHS R37 GM032741
6 · The paper itself

Abstract

Mutations are introduced into rearranged Ig variable genes at a frequency of 10(-2) mutations per base pair by an unknown mechanism. Assuming that DNA repair pathways generate or remove mutations, the frequency and pattern of mutation will be different in variable genes from mice defective in repair. Therefore, hypermutation was studied in mice deficient for either the DNA nucleotide excision repair gene Xpa or the mismatch repair gene Pms2. High levels of mutation were found in variable genes from XPA-deficient and PMS2-deficient mice, indicating that neither nucleotide excision repair nor mismatch repair pathways generate hypermutation. However, variable genes from PMS2-deficient mice had significantly more adjacent base substitutions than genes from wild-type or XPA-deficient mice. By using a biochemical assay, we confirmed that tandem mispairs were repaired by wild-type cells but not by Pms2(-/-) human or murine cells. The data indicate that tandem substitutions are produced by the hypermutation mechanism and then processed by a PMS2-dependent pathway.

Indexed as

Adenosine TriphosphatasesDNA-Binding ProteinsDNA Repair EnzymesGenes, ImmunoglobulinMutationAnimalsAntibodiesBase SequenceDNA RepairHumansImmunoglobulin Variable RegionMiceMice, KnockoutMismatch Repair Endonuclease PMS2Molecular Sequence DataProteinsAdenosine TriphosphatasesAntibodiesDNA-Binding ProteinsDNA Repair EnzymesImmunoglobulin Variable RegionMismatch Repair Endonuclease PMS2PMS2 protein, humanPms2 protein, mouseProteins

Identifiers

PMID9618520
PMCPMC22699
OpenAlexW2104588650

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.