Evidence map›Paper›PMID 9611227›Full record

ArticleNucleic acids research1998

Stochastic, stage-specific mechanisms account for the variegation of a human globin transgene.

T A Graubert, B A Hug, R Wesselschmidt, C L Hsieh, T M Ryan, T M Townes, T J Ley

Abstract read
In one paragraph

Article in Nucleic acids research, 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
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  6. Article
  7. Dissection of platelet and myeloid cell defects by conditional targeting of the beta3-integrin subunit.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2010
    Article
  8. Stem cell expression of the AML1/ETO fusion protein induces a myeloproliferative disorder in mice.Proceedings of the National Academy of Sciences of the United States of America · 2004
    Article
  9. Article
  10. Article
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  12. Article
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  14. Article
  15. Dipeptidyl peptidase I is required for the processing and activation of granzymes A and B in vivo.Proceedings of the National Academy of Sciences of the United States of America · 1999
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

T A GraubertDivision of Bone Marrow Transplantation and Stem Cell Biology, Departments of Medicine and Genetics, Washington University School of Medicine, Campus Box 8007, 660 South Euclid Avenue, St Louis, MO 63110-1093, USA. timley@im.wustl.edu
B A Hug
R Wesselschmidt
C L Hsieh
T M Ryan
T M Townes
T J Ley

Funding

THE ROLE OF GRANZYMES IN CYTOTOXIC LYMPHOCYTE FUNCTIONSR01DK049786 · NIDDK · WASHINGTON UNIVERSITY · PI LEY, TIMOTHY J. · 1995 to 2009
$3.5M
REGULATION OF HEMOGLOBINR37DK038682 · NIDDK · WASHINGTON UNIVERSITY · PI LEY, TIMOTHY J. · 1996 to 2008
$2.4M
REGULATION OF FETAL AND ADULT HUMAN HEMOGLOBIN PRODUCTIONR56DK038682 · NIDDK · WASHINGTON UNIVERSITY · PI LEY, TIMOTHY J. · 2010 to 2010
$100k
TRANSCRIPTIONAL REGULATION AND ROLE OF BCL-2 IN DEVELOPMENT AND NEOPLASIAP01CA049712 · NCI · WASHINGTON UNIVERSITY · PI LEY, TIMOTHY J · 1989 to 1999
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REGULATION OF HEMOGLOBIN PRODUCTIONR01DK038682 · NIDDK · WASHINGTON UNIVERSITY · PI LEY, TIMOTHY J · 1987 to 1998
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NCI NIH HHS CA49712NIDDK NIH HHS DK38682NIDDK NIH HHS DK49786
6 · The paper itself

Abstract

The random insertion of transgenes into the genomic DNA of mice usually leads to widely variable levels of expression in individual founder lines. To study the mechanisms that cause variegation, we designed a transgene that we expected to variegate, which consisted of a beta-globin locus control region 5' HS-2 linked in tandem to a tagged human beta-globin gene (into which a Lac-Z cassette had been inserted). All tested founder lines exhibited red blood cell-specific expression, but levels of expression varied >1000-fold from the lowest to the highest expressing line. Most of the variation in levels of expression appeared to reflect differences in the percentage of cells in the peripheral blood that expressed the transgene, which ranged from 0.3% in the lowest expressing line to 88% in the highest; the level of transgene expression per cell varied no more than 10-fold from the lowest to the highest expressing line. These differences in expression levels could not be explained by the location of transgene integration, by an effect of beta-galactosidase on red blood cell survival, by the half life of the beta-galactosidase enzyme or by the age of the animals. The progeny of all early erythroid progenitors (BFU-E colony-forming cells) exhibited the same propensity to variegate in methylcellulose-based cultures, suggesting that the decision to variegate occurs after the BFU-E stage of erythroid differentiation. Collectively, these data suggest that variegation in levels of transgene expression are due to local, integration site-dependent phenomena that alter the probability that a transgene will be expressed in an appropriate cell; however, these local effects have a minimal impact on the transgene's activity in the cells that initiate transcription.

Indexed as

Age FactorsAnimalsbeta-GalactosidaseCells, CulturedCell SurvivalErythroid Precursor CellsGene Expression Regulation, DevelopmentalGenetic VariationGlobinsHumansLocus Control RegionMiceMice, TransgenicReticulocytesStochastic ProcessesTransgenesbeta-GalactosidaseGlobins

Identifiers

PMID9611227
PMCPMC147660

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.