Evidence map›Paper›PMID 9606177›Full record

ArticleMolecular medicine (Cambridge, Mass.)1998

Clonally-related immunoglobulin VH domains and nonrandom use of DH gene segments in rheumatoid arthritis synovium.

B E Clausen, S L Bridges, J C Lavelle, P G Fowler, S Gay, W J Koopman, H W Schroeder

Open access · bronzeAbstract read
In one paragraph

Article in Molecular medicine (Cambridge, Mass.), 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.2field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 21 citations in OpenAlex.

  1. Ageing of the B-cell repertoire.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2015
    Article
  2. Article
  3. A methionine aminopeptidase-2 inhibitor, PPI-2458, for the treatment of rheumatoid arthritis.Proceedings of the National Academy of Sciences of the United States of America · 2004
    Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

B E ClausenDivision of Clinical Immunology and Rheumatology, University of Alabama at Birmingham 35294, USA.
S L Bridges
J C Lavelle
P G Fowler
S Gay
W J Koopman
H W Schroeder
University of Alabama at Birmingham · US

Funding

NIAID NIH HHS AI18958NIAMS NIH HHS AR01867NIAMS NIH HHS AR03555
6 · The paper itself

Abstract

backgroundSynovia of patients with long-standing rheumatoid arthritis (RA) are typically infiltrated with B lymphocytes and plasma cells that secrete large amounts of immunoglobulin. The CDR3 of an immunoglobulin heavy chain is composed of the VH-DH-JH join, with interposed N region addition, and thus defines clonal relatedness. Furthermore, the CDR3 lies at the center of the antigen binding site, so its length and composition influence antigen binding. We sought definitive evidence of an antigen-driven B cell response (i.e., clones derived from the same VH, DH, and JH gene segments with shared somatic mutations) in RA synovial mRNA transcripts, and to characterize CDR3 intervals at the target of inflammation in this autoimmune disease. MATERIALS AND

methodsWe screened a cDNA library generated from unselected cells from the knee joint of a 62-year-old white female with long-standing RA. This technique does not have the potential bias of selecting for antibodies that express a particular reactivity such as rheumatoid factor. C gamma recombinants were sequenced and progenitor VH, DH, and JH gene segments were assigned and somatic mutations determined by comparison to germline sequences. Analyses of DH reading frame utilization and hydropathy characteristics of CDR3s were performed.

resultsTwo of 67 recombinants were derived from the same VH (V3-11) and JH gene segments, demonstrated shared mutations, and contained nearly identical VH-DH-JH joins, including N region addition. Three other recombinants contained identical sequence throughout the variable domain. We also found preferential utilization of a limited number of VH and DH gene segments and marked preference for a DH reading frame encoding predominantly hydrophilic residues.

conclusionsAnalysis of expressed heavy chain variable domains strongly supports the hypothesis that the B cell response in RA synovium is at least in part antigen driven and oligoclonal.

Indexed as

Amino Acid SequenceArthritis, RheumatoidBase SequenceB-LymphocytesCloning, MolecularDNA, ComplementaryDNA Mutational AnalysisFemaleGene LibraryGene Rearrangement, B-Lymphocyte, Heavy ChainHumansImmunoglobulin Heavy ChainsImmunoglobulin Variable RegionMiddle AgedMolecular Sequence DataReading FramesDNA, ComplementaryImmunoglobulin Heavy ChainsImmunoglobulin Variable RegionRNA, Messenger

Identifiers

PMID9606177
PMCPMC2230361
OpenAlexW1593070938

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.