Evidence map›Paper›PMID 9580697›Full record

ArticleNucleic acids research1998

Upf1 and Upf2 proteins mediate normal yeast mRNA degradation when translation initiation is limited.

C A Barnes

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Deciphering the rules by which 5'-UTR sequences affect protein expression in yeast.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
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  5. Article
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  10. Article
  11. Posttranscriptional control of gene expression in yeast.Microbiology and molecular biology reviews : MMBR · 1998
    Review
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author at 1 institution in 1 country.

C A BarnesDepartment of Microbiology and Immunology, Dalhousie University, Halifax, Nova Scotia B3H 4H7, Canada. cabarnes@is.dal.ca
Dalhousie University · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

mRNA degradation is coupled with the process of mRNA translation. For example, an mRNA molecule, on which translation is prematurely terminated because of a nonsense codon, may be rapidly degraded. This nonsense-mediated mRNA decay in the yeast Saccharomyces cerevisiae is mediated by the Upf1 and Upf2 proteins. Yeast mRNAs can also be selectively destabilized by limiting the rate of translation initiation. Two such destabilized mRNAs, from the SSA1 and SSA2 genes, have been identified using temperature-sensitive mutations affecting the Prt1 component of eukaryotic initiation factor 3. For SSA1 and SSA2 mRNAs, and for structurally modified SSA mRNA derivatives, I show here that degradation is triggered when translation initiation is limited but ongoing. This initiation-dependent mRNA degradation is limited to a subset of mRNAs that includes at least those from the SSA1 and SSA2 genes, and occurs through Upf1- and Upf2-mediated processes, although sequence elements characteristic of nonsense-mediated decay are not evident in these mRNAs.

Indexed as

RNA HelicasesSaccharomyces cerevisiae ProteinsAdaptor Proteins, Signal TransducingAdenosine TriphosphatasesEukaryotic Initiation Factor-2Eukaryotic Initiation Factor-3Fungal ProteinsGene Expression Regulation, FungalGenes, FungalHSP70 Heat-Shock ProteinsMutationPeptide Chain Initiation, TranslationalPeptide Initiation FactorsRNA-Binding ProteinsRNA, FungalRNA, MessengerAdaptor Proteins, Signal TransducingAdenosine TriphosphatasesEukaryotic Initiation Factor-2Eukaryotic Initiation Factor-3Fungal ProteinsHSP70 Heat-Shock ProteinsNAM7 protein, S cerevisiaeNGR1 protein, S cerevisiaeNMD2 protein, S cerevisiaePeptide Initiation FactorsRNA-Binding ProteinsRNA, FungalRNA HelicasesRNA, MessengerSaccharomyces cerevisiae ProteinsSSA1 protein, S cerevisiaeSSA2 protein, S cerevisiaeTrans-Activators

Identifiers

PMID9580697
PMCPMC147546
OpenAlexW2041126758

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.