Evidence map›Paper›PMID 9580692›Full record

ArticleNucleic acids research1998

Rapid design of denaturing gradient-based two-dimensional electrophoretic gene mutational scanning tests.

N J van Orsouw, R K Dhanda, R D Rines, W M Smith, I Sigalas, C Eng, J Vijg

Abstract read
In one paragraph

Article in Nucleic acids research, 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Automated mutation analysis.Journal of inherited metabolic disease · 1999
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

N J van OrsouwMolecular Genetics Section, Gerontology Division, Department of Medicine, Beth Israel Deaconess Medical Center and Harvard Medical School, Harvard Institutes of Medicine, Suite 921, 77 Avenue Louis Pasteur, Boston, MA 02115, USA. nvanorso@bidmc.harvard.edR
R K Dhanda
R D Rines
W M Smith
I Sigalas
C Eng
J Vijg

Funding

HARVARD NATHAN SHOCK CENTER IN BASIC BIOLOGY OF AGINGP30AG013314 · NIA · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI CALKINS, DAVID R · 1996 to 2000
$100k
NIA NIH HHS 1P30AG13314-01
6 · The paper itself

Abstract

With the current rapid pace at which human disease genes are identified there is a need for practical, cost-efficient genetic screening tests. Two-dimensional electrophoretic separation of PCR-amplified gene fragments on the basis of size and base pair sequence, in non-denaturing and denaturing gradient polyacrylamide gels respectively, provides a rapid parallel approach to gene mutational scanning. Accuracy of the denaturing gradient gel electrophoresis (DGGE) component of this system strongly depends on the design of the PCR primers and the melting characteristics of the fragments they encompass. We have developed a fully automated generally applicable procedure to generate optimal two-dimensional test designs at a minimum amount of time and effort. Designs were generated for the RB1 , TP53 , MLH1 and BRCA1 genes that can be readily implemented in research and clinical laboratories as low cost genetic screening tests.

Indexed as

Adaptor Proteins, Signal TransducingCarrier ProteinsDNADNA Mutational AnalysisElectrophoresis, Gel, Two-DimensionalExonsGenes, Tumor SuppressorGenetic TestingHumansMutL Protein Homolog 1Neoplasm ProteinsNuclear ProteinsNucleic Acid DenaturationPolymerase Chain ReactionAdaptor Proteins, Signal TransducingCarrier ProteinsDNAMLH1 protein, humanMutL Protein Homolog 1Neoplasm ProteinsNuclear Proteins

Identifiers

PMID9580692
PMCPMC147570

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.