ArticleProceedings of the National Academy of Sciences of the United States of America1998
Architectural specificity in chromatin structure at the TATA box in vivo: nucleosome displacement upon beta-phaseolin gene activation.
Article in Proceedings of the National Academy of Sciences of the United States of America, 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
29 citing papers in PubMed, 65 citations in OpenAlex.
- Genomic Analysis of Storage Protein Deficiency in Genetically Related Lines of Common Bean (Phaseolus vulgaris).Frontiers in plant science · 2016Article
- Global nucleosome positioning regulates salicylic acid mediated transcription in Arabidopsis thaliana.BMC plant biology · 2015Article
- Gene networks and chromatin and transcriptional regulation of the phaseolin promoter in Arabidopsis.The Plant cell · 2013Article
- Characterization of the mannan synthase promoter from guar (Cyamopsis tetragonoloba).Plant cell reports · 2011Article
- Dynamic and selective nucleosome repositioning during endotoxin tolerance.The Journal of biological chemistry · 2010Article
- Repression of seed maturation genes by a trihelix transcriptional repressor in Arabidopsis seedlings.The Plant cell · 2009Article
- The Arabidopsis BRAHMA chromatin-remodeling ATPase is involved in repression of seed maturation genes in leaves.Plant physiology · 2008Article
- PvALF and FUS3 activate expression from the phaseolin promoter by different mechanisms.Plant molecular biology · 2008Article
- Ordered histone modifications are associated with transcriptional poising and activation of the phaseolin promoter.The Plant cell · 2006Article
- Analysis of chromatin structure in the control regions of the chlamydomonas HSP70A and RBCS2 genes.Plant molecular biology · 2005Article
- Generalizations of Markov model to characterize biological sequences.BMC bioinformatics · 2005Article
- Phytochrome control of the Arabidopsis transcriptome anticipates seedling exposure to light.The Plant cell · 2005Article
- A two-edged role for the transposable element Kiddo in the rice ubiquitin2 promoter.The Plant cell · 2005Article
- Gene regulation in planta by plant-derived engineered zinc finger protein transcription factors.Plant molecular biology · 2005Article
- Interaction of PvALF and VP1 B3 domains with the beta -phaseolin promoter.Plant molecular biology · 2004Article
- The 5' UTR negatively regulates quantitative and spatial expression from the ABI3 promoter.Plant molecular biology · 2004Article
- Fragile X (CGG)n repeats induce a transcriptional repression in cis upon a linked promoter: evidence for a chromatin mediated effect.BMC molecular biology · 2003Article
- Transcriptional regulation: a genomic overview.The arabidopsis book · 2002Article
- Methods for the analysis of protein-chromatin interactions.Molecular biotechnology · 2002Review
- Nucleosomes are translationally positioned on the active allele and rotationally positioned on the inactive allele of the HPRT promoter.Molecular and cellular biology · 2001Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors at 1 institution in 1 country.
Funding
Abstract
Extensive studies of the beta-phaseolin (phas) gene in transgenic tobacco have shown that it is highly active during seed embryogenesis but is completely silent in leaf and other vegetative tissues. In vivo footprinting revealed that the lack of even basal transcriptional activity in vegetative tissues is associated with the presence of a nucleosome that is rotationally positioned with base pair precision over three phased TATA boxes present in the phas promoter. Positioning is sequence-dependent because an identical rotational setting is obtained upon nucleosome reconstitution in vitro. A comparison of DNase I and dimethyl sulfate footprints in vivo and in vitro strongly suggests that this repressive chromatin architecture is remodeled concomitant with gene activation in the developing seed. This leads to the disruption of histone-mediated DNA wrapping and the assembly of the TATA boxes into a transcriptionally competent nucleoprotein complex.
Identifiers
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.