Evidence map›Paper›PMID 9539728›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America1998

Membrane-bound state of the colicin E1 channel domain as an extended two-dimensional helical array.

S D Zakharov, M Lindeberg, Y Griko, Z Salamon, G Tollin, F G Prendergast, W A Cramer

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. pH (low) insertion peptide (pHLIP) inserts across a lipid bilayer as a helix and exits by a different path.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  9. Colicin biology.Microbiology and molecular biology reviews : MMBR · 2007
    Review
  10. Interactions of apomyoglobin with membranes: mechanisms and effects on heme uptake.Protein science : a publication of the Protein Society · 2007
    Article
  11. Article
  12. Article
  13. Tuning the membrane surface potential for efficient toxin import.Proceedings of the National Academy of Sciences of the United States of America · 2002
    Article
  14. Article
  15. Article
  16. Unfolding and refolding of cytochrome c driven by the interaction with lipid micelles.Protein science : a publication of the Protein Society · 2000
    Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

S D ZakharovDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907, USA.
M Lindeberg
Y Griko
Z Salamon
G Tollin
F G Prendergast
W A Cramer

Funding

THE MECHANISM OF ACTION OF COLICIN E1R01GM018457 · NIGMS · PURDUE UNIVERSITY WEST LAFAYETTE · PI CRAMER, WILLIAM A. · 1985 to 2007
$2.2M
STRUCTURE/LUMINESCENCE CORRELATIONS IN PROTEINSR01GM034847 · NIGMS · MAYO CLINIC COLL OF MEDICINE, ROCHESTER · PI PRENDERGAST, FRANKLYN G · 1985 to 2001
$715k
WATER INDUCED ACTIVITY ON ACTINOMYCIN D DNA INTERCALATIONP41RR004328 · NCRR · JOHNS HOPKINS UNIVERSITY · PI KAHN, SABER · 1988 to 1997
–
NCRR NIH HHS RR04328NIGMS NIH HHS GM-18457NIGMS NIH HHS GM-34847NIGMS NIH HHS R01 GM018457
6 · The paper itself

Abstract

Atomic level structures have been determined for the soluble forms of several colicins and toxins, but the structural changes that occur after membrane binding have not been well characterized. Changes occurring in the transition from the soluble to membrane-bound state of the C-terminal 190-residue channel polypeptide of colicin E1 (P190) bound to anionic membranes are described. In the membrane-bound state, the alpha-helical content increases from 60-64% to 80-90%, with a concomitant increase in the average length of the helical segments from 12 to 16 or 17 residues, close to the length required to span the membrane bilayer in the open channel state. The average distance between helical segments is increased and interhelix interactions are weakened, as shown by a major loss of tertiary structure interactions, decreased efficiency of fluorescence resonance energy transfer from an energy donor on helix V of P190 to an acceptor on helix IX, and decreased resonance energy transfer at higher temperatures, not observed in soluble P190, implying freedom of motion of helical segments. Weaker interactions are also shown by a calorimetric thermal transition of low cooperativity, and the extended nature of the helical array is shown by a 3- to 4-fold increase in the average area subtended per molecule to 4,200 A2 on the membrane surface. The latter, with analysis of the heat capacity changes, implies the absence of a developed hydrophobic core in the membrane-bound P190. The membrane interfacial layer thus serves to promote formation of a highly helical extended two-dimensional flexible net. The properties of the membrane-bound state of the colicin channel domain (i.e., hydrophobic anchor, lengthened and loosely coupled alpha-helices, and close association with the membrane interfacial layer) are plausible structural features for the state that is a prerequisite for voltage gating, formation of transmembrane helices, and channel opening.

Indexed as

Protein Structure, SecondaryCalorimetry, Differential ScanningCell MembraneCircular DichroismColicinsEnergy TransferIon ChannelsLiposomesModels, MolecularNuclear Magnetic Resonance, BiomolecularPhosphatidylcholinesPhosphatidylglycerolsSpectroscopy, Fourier Transform InfraredThermodynamics1,2-dioleoyl-sn-glycero-3-phosphoglycerol1,2-oleoylphosphatidylcholineColicinsIon ChannelsLiposomesPhosphatidylcholinesPhosphatidylglycerols

Identifiers

PMID9539728
PMCPMC22480

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.