Evidence map›Paper›PMID 9537398›Full record

ArticleJournal of bacteriology1998

The atrazine catabolism genes atzABC are widespread and highly conserved.

M L de Souza, J Seffernick, B Martinez, M J Sadowsky, L P Wackett

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
7.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 235 citations in OpenAlex.

  1. Article
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  7. Review
  8. Rapid biodegradation of atrazine by a novelFrontiers in microbiology · 2022
    Article
  9. Setting the stage for evolution of a new enzyme.Current opinion in structural biology · 2021
    Review
  10. Review
  11. Article
  12. Biodegradation of Atrazine by the NovelBioMed research international · 2019
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 2 countries.

M L de SouzaDepartment of Biochemistry, Biological Process Technology Institute, and Center for Biodegradation Research and Informatics, University of Minnesota, St. Paul 55108, USA.
J Seffernick
B Martinez
M J Sadowsky
L P Wackett
University of Minnesota · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pseudomonas strain ADP metabolizes the herbicide atrazine via three enzymatic steps, encoded by the genes atzABC, to yield cyanuric acid, a nitrogen source for many bacteria. Here, we show that five geographically distinct atrazine-degrading bacteria contain genes homologous to atzA, -B, and -C. The sequence identities of the atz genes from different atrazine-degrading bacteria were greater than 99% in all pairwise comparisons. This differs from bacterial genes involved in the catabolism of other chlorinated compounds, for which the average sequence identity in pairwise comparisons of the known members of a class ranged from 25 to 56%. Our results indicate that globally distributed atrazine-catabolic genes are highly conserved in diverse genera of bacteria.

Indexed as

Genes, BacterialAtrazineBacteriaBase SequenceConserved SequenceDNA, BacterialPolymerase Chain ReactionAtrazineDNA, Bacterial

Identifiers

PMID9537398
PMCPMC107113
OpenAlexW2137581957

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.