Evidence map›Paper›PMID 9512555›Full record

ArticleNucleic acids research1998

Correct usage of multiple transcription initiation sites and C/EBP-dependent transcription activation of the rat XDH/XO TATA-less promoter requires downstream elements located in the coding region of the gene.

M P Clark, C W Chow, J E Rinaldo, R Chalkley

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
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  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

M P ClarkDepartment of Medicine, School of Medicine, Vanderbilt University, Nashville, TN 37232, USA.
C W Chow
J E Rinaldo
R Chalkley
Vanderbilt University · USNashville VA Medical Center · US

Funding

THE THEORY OF BLOOD-TISSUE-LYMPH TRANSPORT IN THE LUNGP50HL019153 · NHLBI · VANDERBILT UNIVERSITY · PI BRIGHAM, KENNETH L · 1985 to 1998
–
NHLBI NIH HHS HL 19153
6 · The paper itself

Abstract

In the present study, we have shown that a downstream element located in the coding region of the TATA-less rat xanthine dehydrogenase/oxidase (XDH/XO) gene (-7 to +42) plays an important role in transcription initiation and C/EBP transcriptional activation. Previous work from our laboratory has shown that the promoter is organized with multiple initiator elements (Inr 1, 2, 3 and 4) which are important for transcription initiation. Additionally, we had identified two C/EBP binding sites upstream of this promoter. Deletional and mutational studies revealed that C/EBP binding was not essential for the basal level of transcriptional initation. However when XO-luciferase constructs include downstream sequence extending to +42 there is development of C/EBP sensitivity as well as a shift in the initiator usage. In the absence of the downstream element, primer extension analyses reveals Inr 3 and 4 to be the major start sites but in the presence of this additional sequence the usage is shifted to Inr 1 and 2. This shift in Inr usage more closely resembles that seen in intact macrophages or liver cells. Gel mobility shift assays indicate the presence of several binding factors located in this downstream region, one of which has been identified as YY-1. We postulate that YY-1 allows DNA bending which permits the upstream C/EBP elements to exhibit a transcriptional activation which is not seen when the downstream element is absent. This study presents a potential model for regulation of the XDH/XO promoter.

Indexed as

Promoter Regions, GeneticTranscription, GeneticAnimalsCCAAT-Enhancer-Binding ProteinsDNA-Binding ProteinsGene Expression Regulation, EnzymologicGenes, ReporterHeLa CellsHumansKineticsLuciferasesMutagenesis, Site-DirectedNuclear ProteinsPolymerase Chain ReactionRatsRecombinant Fusion ProteinsCCAAT-Enhancer-Binding ProteinsDNA-Binding ProteinsLuciferasesNuclear ProteinsRecombinant Fusion ProteinsTranscription FactorsXanthine DehydrogenaseXanthine Oxidase

Identifiers

PMID9512555
PMCPMC147445
OpenAlexW2069918637

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.