Evidence map›Paper›PMID 9488431›Full record

ArticleMolecular and cellular biology1998

Functional relationships of Srb10-Srb11 kinase, carboxy-terminal domain kinase CTDK-I, and transcriptional corepressor Ssn6-Tup1.

S Kuchin, M Carlson

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 1998. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed, 1 pooled it
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 1 synthesis or guideline pooled it, 126 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Cyclin-dependent kinases: Masters of the eukaryotic universe.Wiley interdisciplinary reviews. RNA · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 2 countries.

S KuchinDepartment of Genetics and Development, Columbia University, New York, New York 10032, USA.
M Carlson
Columbia University · USInstitut thématique Génétique, génomique et bioinformatique · FR

Funding

REGULATION OF YEAST INVERTASE GENE EXPRESSIONR37GM034095 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CARLSON, MARIAN B · 1996 to 2005
$3.1M
REGULATION OF YEAST INVERTASE GENE EXPRESSIONR01GM034095 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI CARLSON, MARIAN B · 1985 to 2014
$2.9M
SNF/SWI COMPLEX AND TRANSCRIPTIONAL ACTIVATIONR01GM047259 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI CARLSON, MARIAN B · 1992 to 2004
$1.3M
NIGMS NIH HHS GM34095NIGMS NIH HHS GM47259NIGMS NIH HHS R01 GM034095NIGMS NIH HHS R01 GM047259NIGMS NIH HHS R37 GM034095
6 · The paper itself

Abstract

The Srb10-Srb11 protein kinase of Saccharomyces cerevisiae is a cyclin-dependent kinase (cdk)-cyclin pair which has been found associated with the carboxy-terminal domain (CTD) of RNA polymerase II holoenzyme forms. Previous genetic findings implicated the Srb10-Srb11 kinase in transcriptional repression. Here we use synthetic promoters and LexA fusion proteins to test the requirement for Srb10-Srb11 in repression by Ssn6-Tup1, a global corepressor. We show that srb10delta and srb11delta mutations reduce repression by DNA-bound LexA-Ssn6 and LexA-Tup1. A point mutation in a conserved subdomain of the kinase similarly reduced repression, indicating that the catalytic activity is required. These findings establish a functional link between Ssn6-Tup1 and the Srb10-Srb11 kinase in vivo. We also explored the relationship between Srb10-Srb11 and CTD kinase I (CTDK-I), another member of the cdk-cyclin family that has been implicated in CTD phosphorylation. We show that mutation of CTK1, encoding the cdk subunit, causes defects in transcriptional repression by LexA-Tup1 and in transcriptional activation. Analysis of the mutant phenotypes and the genetic interactions of srb10delta and ctk1A suggests that the two kinases have related but distinct roles in transcriptional control. These genetic findings, together with previous biochemical evidence, suggest that one mechanism of repression by Ssn6-Tup1 involves functional interaction with RNA polymerase II holoenzyme.

Indexed as

DNA-Binding ProteinsGene Expression Regulation, FungalNuclear ProteinsSaccharomyces cerevisiae ProteinsBacterial Proteinsbeta-FructofuranosidaseCyclin-Dependent Kinase 8Cyclin-Dependent KinasesCyclinsFungal ProteinsGlycoside HydrolasesHydro-LyasesLac OperonLexA Repressor ProteinProtein KinasesProtein Serine-Threonine KinasesBacterial Proteinsbeta-Fructofuranosidasecarboxy-terminal domain kinaseCYC8 protein, S cerevisiaeCyclin-Dependent Kinase 8Cyclin-Dependent KinasesCyclinsDNA-Binding ProteinsFungal ProteinsGlycoside HydrolasesHydro-Lyasesimidazoleglycerolphosphate dehydrataseLexA Repressor ProteinNuclear ProteinsProtein KinasesProtein Serine-Threonine KinasesRecombinant Fusion ProteinsRepressor ProteinsSaccharomyces cerevisiae ProteinsSerine EndopeptidasesSSN3 protein, S cerevisiaeSSN8 protein, S cerevisiaeTranscription FactorsTUP1 protein, S cerevisiae

Identifiers

PMID9488431
PMCPMC108829
OpenAlexW2135563174

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.